Guide to the Human Genome
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Name: LOC100130431 Sequence: fasta or formatted (190aa) NCBI GI: 169202296
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {190aa} PREDICTED: hypothetical protein
alt prot {190aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         22           2
 C cysteine            1.6          3           1
 D aspartate           2.1          4           1
 E glutamate           2.6          5           1
 F phenylalanine       4.2          8           1
 G glycine             9.5         18           2
 H histidine           2.1          4           1
 I isoleucine          1.6          3           1
 K lysine              1.1          2           1
 L leucine             8.9         17           3
 M methionine          1.1          2           1
 N asparagine          1.6          3           1
 P proline            18.9         36           4
 Q glutamine           2.6          5           1
 R arginine           10.5         20           2
 S serine              8.4         16           2
 T threonine           5.3         10           1
 V valine              4.7          9           2
 W tryptophan          1.6          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130431          0.992   PREDICTED: hypothetical protein 
LOC100130431          0.992   PREDICTED: hypothetical protein 
WAS                   0.069   Wiskott-Aldrich syndrome protein 
NACA                  0.064   nascent polypeptide-associated complex alpha subuni...
TAF4                  0.059   TBP-associated factor 4 
WASF1                 0.056   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.056   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.056   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.056   Wiskott-Aldrich syndrome protein family member 1 [Hom...
WASL                  0.053   Wiskott-Aldrich syndrome gene-like protein 
LOC100292727          0.053   PREDICTED: hypothetical protein 
NHSL1                 0.051   NHS-like 1 
RAPH1                 0.051   Ras association and pleckstrin homology domains 1 is...
LOC100290430          0.051   PREDICTED: hypothetical protein XP_002346632 
LOC100287920          0.051   PREDICTED: hypothetical protein XP_002344198 
RANBP9                0.048   RAN binding protein 9 
SYNPO                 0.048   synaptopodin isoform A 
SYVN1                 0.045   synoviolin 1 isoform b 
VASP                  0.045   vasodilator-stimulated phosphoprotein 
LOC100289242          0.045   PREDICTED: hypothetical protein XP_002342243 
SCRT1                 0.045   scratch 
PSD                   0.045   pleckstrin and Sec7 domain containing 
FMNL1                 0.045   formin-like 1 
LOC100292837          0.045   PREDICTED: hypothetical protein 
ABI1                  0.045   abl-interactor 1 isoform a 
SFPQ                  0.045   splicing factor proline/glutamine rich (polypyrimidin...
SYVN1                 0.043   synoviolin 1 isoform a 
MYO15A                0.043   myosin XV 
LOC100292378          0.043   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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