Guide to the Human Genome
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Name: LOC100130431 Sequence: fasta or formatted (190aa) NCBI GI: 169203510
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {190aa} PREDICTED: hypothetical protein
alt mRNA {190aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         22           2
 C cysteine            1.6          3           1
 D aspartate           2.1          4           1
 E glutamate           2.6          5           1
 F phenylalanine       4.2          8           1
 G glycine             8.9         17           2
 H histidine           2.1          4           1
 I isoleucine          1.6          3           1
 K lysine              1.1          2           1
 L leucine             8.9         17           3
 M methionine          1.1          2           1
 N asparagine          1.6          3           1
 P proline            18.9         36           4
 Q glutamine           2.6          5           1
 R arginine           10.5         20           2
 S serine              8.4         16           2
 T threonine           5.3         10           1
 V valine              4.7          9           2
 W tryptophan          2.1          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130431          1.000   PREDICTED: hypothetical protein 
LOC100130431          0.987   PREDICTED: hypothetical protein 
WAS                   0.066   Wiskott-Aldrich syndrome protein 
NACA                  0.058   nascent polypeptide-associated complex alpha subuni...
TAF4                  0.056   TBP-associated factor 4 
WASL                  0.050   Wiskott-Aldrich syndrome gene-like protein 
LOC100292727          0.050   PREDICTED: hypothetical protein 
NHSL1                 0.050   NHS-like 1 
WASF1                 0.050   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.050   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.050   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.050   Wiskott-Aldrich syndrome protein family member 1 [Hom...
LOC100290430          0.048   PREDICTED: hypothetical protein XP_002346632 
SYVN1                 0.045   synoviolin 1 isoform b 
LOC100287920          0.045   PREDICTED: hypothetical protein XP_002344198 
RANBP9                0.045   RAN binding protein 9 
SYNPO                 0.045   synaptopodin isoform A 
ABI1                  0.045   abl-interactor 1 isoform a 
SYVN1                 0.042   synoviolin 1 isoform a 
VASP                  0.042   vasodilator-stimulated phosphoprotein 
LOC100292837          0.042   PREDICTED: hypothetical protein 
WASF2                 0.042   WAS protein family, member 2 
CPSF6                 0.042   cleavage and polyadenylation specific factor 6, 68 ...
RAPH1                 0.042   Ras association and pleckstrin homology domains 1 is...
SFPQ                  0.042   splicing factor proline/glutamine rich (polypyrimidin...
MYO15A                0.040   myosin XV 
LOC100292378          0.040   PREDICTED: hypothetical protein 
LOC100290783          0.040   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.040   PREDICTED: hypothetical protein XP_002343435 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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