Guide to the Human Genome
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Name: LOC100292837 Sequence: fasta or formatted (204aa) NCBI GI: 239753089
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         27           2
 C cysteine            3.9          8           2
 D aspartate           2.5          5           2
 E glutamate           4.4          9           2
 F phenylalanine       2.0          4           1
 G glycine             9.8         20           2
 H histidine           2.0          4           1
 I isoleucine          0.5          1           1
 K lysine              2.0          4           1
 L leucine             2.9          6           1
 M methionine          0.5          1           1
 N asparagine          1.5          3           1
 P proline            16.7         34           6
 Q glutamine           3.4          7           2
 R arginine           14.2         29           2
 S serine              9.8         20           2
 T threonine           4.4          9           2
 V valine              3.9          8           3
 W tryptophan          1.5          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290612          0.422   PREDICTED: hypothetical protein XP_002348127 
LOC100289357          0.405   PREDICTED: hypothetical protein XP_002342220 
FOXG1                 0.049   forkhead box G1 
WIPF2                 0.049   WIRE protein 
LOC100132234          0.046   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.046   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.046   PREDICTED: hypothetical protein LOC100132234 
SFPQ                  0.046   splicing factor proline/glutamine rich (polypyrimidin...
NDUFV3                0.041   NADH-ubiquinone oxidoreductase flavoprotein 3 isofor...
UTF1                  0.041   undifferentiated embryonic cell transcription factor...
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
LOC100130431          0.041   PREDICTED: hypothetical protein 
WAS                   0.039   Wiskott-Aldrich syndrome protein 
LOC100130431          0.039   PREDICTED: hypothetical protein 
LOC100130431          0.039   PREDICTED: hypothetical protein 
MINK1                 0.039   misshapen/NIK-related kinase isoform 3 
LMTK3                 0.039   lemur tyrosine kinase 3 
PRB3                  0.039   proline-rich protein BstNI subfamily 3 precursor [H...
FLJ22184              0.036   PREDICTED: hypothetical protein FLJ22184 
LOC100130360          0.036   PREDICTED: hypothetical protein 
WIPF1                 0.036   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.036   WAS/WASL interacting protein family, member 1 
PRB4                  0.036   proline-rich protein BstNI subfamily 4 precursor [Ho...
SAMD1                 0.036   sterile alpha motif domain containing 1 
SRRM1                 0.036   serine/arginine repetitive matrix 1 
MUC7                  0.034   mucin 7, secreted precursor 
LOC100290265          0.034   PREDICTED: hypothetical protein XP_002346787 
FLJ22184              0.034   PREDICTED: hypothetical protein LOC80164 
MUC7                  0.034   mucin 7, secreted precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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