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Search of human proteins with 169184624
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
(267 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 562 e-161
gi|31881675 synaptotagmin XV isoform a [Homo sapiens] 147 1e-35
gi|31881667 synaptotagmin XV isoform b [Homo sapiens] 147 1e-35
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 49 5e-06
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 47 2e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 46 4e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens] 46 4e-05
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 43 3e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 42 4e-04
gi|197276661 paired box 1 [Homo sapiens] 42 6e-04
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 42 7e-04
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 42 7e-04
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 42 7e-04
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 42 7e-04
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 41 0.001
gi|18079216 CASK interacting protein 1 [Homo sapiens] 40 0.002
gi|48762934 alpha 2 type I collagen [Homo sapiens] 40 0.002
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 40 0.002
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 40 0.002
gi|22538470 eomesodermin [Homo sapiens] 40 0.003
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo ... 40 0.003
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 40 0.003
gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo ... 40 0.003
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 40 0.003
gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo ... 40 0.003
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 40 0.003
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] 40 0.003
gi|169403959 ankyrin repeat domain 53 isoform a [Homo sapiens] 40 0.003
gi|169403957 ankyrin repeat domain 53 isoform b [Homo sapiens] 40 0.003
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 562 bits (1449), Expect = e-161
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MAALGLALRKCQKGFPFQKTSHYPTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWL 60
MAALGLALRKCQKGFPFQKTSHYPTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWL
Sbjct: 1 MAALGLALRKCQKGFPFQKTSHYPTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWL 60
Query: 61 RPLHPGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPP 120
RPLHPGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPP
Sbjct: 61 RPLHPGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPP 120
Query: 121 GLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAA 180
GLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAA
Sbjct: 121 GLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAA 180
Query: 181 QPQPPRPARPACGSSPMAEQLALVIGGTIGGLLLLLLIGASCCLWRRFCATLTYEELPGT 240
QPQPPRPARPACGSSPMAEQLALVIGGTIGGLLLLLLIGASCCLWRRFCATLTYEELPGT
Sbjct: 181 QPQPPRPARPACGSSPMAEQLALVIGGTIGGLLLLLLIGASCCLWRRFCATLTYEELPGT 240
Query: 241 PAMATTAASSGQRDRPCQPHARTQLSR 267
PAMATTAASSGQRDRPCQPHARTQLSR
Sbjct: 241 PAMATTAASSGQRDRPCQPHARTQLSR 267
>gi|31881675 synaptotagmin XV isoform a [Homo sapiens]
Length = 421
Score = 147 bits (370), Expect = 1e-35
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 197 MAEQLALVIGGTIGGLLLLLLIGASCCLWRRFCATLTYEELPGTPAMATTAASSGQRDRP 256
MAEQLALVIGGTIGGLLLLLLIGASCCLWRRFCATLTYEELPGTPAMATTAASSGQRDRP
Sbjct: 1 MAEQLALVIGGTIGGLLLLLLIGASCCLWRRFCATLTYEELPGTPAMATTAASSGQRDRP 60
Query: 257 CQPHARTQLSR 267
CQPHARTQLSR
Sbjct: 61 CQPHARTQLSR 71
>gi|31881667 synaptotagmin XV isoform b [Homo sapiens]
Length = 390
Score = 147 bits (370), Expect = 1e-35
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 197 MAEQLALVIGGTIGGLLLLLLIGASCCLWRRFCATLTYEELPGTPAMATTAASSGQRDRP 256
MAEQLALVIGGTIGGLLLLLLIGASCCLWRRFCATLTYEELPGTPAMATTAASSGQRDRP
Sbjct: 1 MAEQLALVIGGTIGGLLLLLLIGASCCLWRRFCATLTYEELPGTPAMATTAASSGQRDRP 60
Query: 257 CQPHARTQLSR 267
CQPHARTQLSR
Sbjct: 61 CQPHARTQLSR 71
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 48.9 bits (115), Expect = 5e-06
Identities = 58/230 (25%), Positives = 82/230 (35%), Gaps = 46/230 (20%)
Query: 28 PEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLH-------PGAEGSQTRPSGAPQF 80
P PE S G ++G PH G LRP PGAE S + P
Sbjct: 482 PRPPEPSQGPSTTSSGGGTGPH----PPSGTTLRPPTSSTPGGPPGAENSTSHQPATPGG 537
Query: 81 TTLLALAAGSPWRPWRPG--------PALAGALRFPGAHGRLCAPPPPGLGLGQGR---- 128
T G+ +P PG PA P PP +G
Sbjct: 538 DTAQTPKPGTS-QPMPPGVGTSTSHQPATPSGGTAQTPEPGTSQPMPPSMGTSTSHQPAT 596
Query: 129 --AGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALR---DGLAAQPQ 183
G P S P+P P +GTS++ +PT P G + +QP
Sbjct: 597 PGGGTAQTPEAGTSQPMP-------PGMGTSTSH-----QPTTPGGGTAQTPEPGTSQPM 644
Query: 184 PPRPARPACGSSPMAEQLALVI-----GGTIGGLLLLLLIGASCCLWRRF 228
P + P+ G P ++ V+ GG +G LLLL L+G + + + +
Sbjct: 645 PLSKSTPSSGGGPSEDKRFSVVDMAALGGVLGALLLLALLGLAVLVHKHY 694
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 47.0 bits (110), Expect = 2e-05
Identities = 52/167 (31%), Positives = 62/167 (37%), Gaps = 24/167 (14%)
Query: 26 PPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQTRPSGAPQFTTLLA 85
PPP+ S G + P GG +G RP P EG P G Q
Sbjct: 81 PPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKP--EGPP--PQGGNQ------ 130
Query: 86 LAAGSPWRPWRP-GPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGAGSLPLP 144
+ G P RP +P GP G + G PP PG G G + G P P
Sbjct: 131 -SQGPPPRPGKPEGPPPQGGNQSQG------PPPRPGKPEGPPPQGGN---QSQGPPPHP 180
Query: 145 CTARLPAPQLGTSSTTDRPCARPTAPRG-ALRDGLAAQPQPPRPARP 190
P PQ G S P RP P G + G +Q PPRP +P
Sbjct: 181 GKPEGPPPQGGNQS--QGPPPRPGKPEGPPPQGGNQSQGPPPRPGKP 225
Score = 45.4 bits (106), Expect = 5e-05
Identities = 57/188 (30%), Positives = 66/188 (35%), Gaps = 40/188 (21%)
Query: 26 PPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGA-EGSQTRPSGAPQFTTLL 84
PPP+ S G + P GG +G P HPG EG P G Q
Sbjct: 144 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP---PPHPGKPEGPP--PQGGNQ----- 193
Query: 85 ALAAGSPWRPWRP-GPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGAGSLPL 143
+ G P RP +P GP G + G PP PG G G G +P+G P
Sbjct: 194 --SQGPPPRPGKPEGPPPQGGNQSQGP------PPRPGKPEGPPSQG-GNKPQGPP--PH 242
Query: 144 PCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAAQPQPP---------------RPA 188
P + P PQ G P RP P G QP PP RP
Sbjct: 243 PGKPQGPPPQEGNKPQRPPPPGRPQGPPPP--GGNPQQPLPPPAGKPQGPPPPPQGGRPH 300
Query: 189 RPACGSSP 196
RP G P
Sbjct: 301 RPPQGQPP 308
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 45.8 bits (107), Expect = 4e-05
Identities = 49/185 (26%), Positives = 66/185 (35%), Gaps = 31/185 (16%)
Query: 14 GFPFQKTSHYPTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQTR 73
G P + PT P+QP + + G + P GG P A S R
Sbjct: 501 GSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAP----PAARPPASPSPQR 556
Query: 74 PSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGL 133
+G PQ T +++ +P P +GA PPG GQ R G
Sbjct: 557 QAGPPQATRQTSVSGPAP-------PKASGA--------------PPG---GQQRQGPPQ 592
Query: 134 RPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAAQPQP--PRPARPA 191
+P G + P P+ G TT +P P G + LA +P P PA A
Sbjct: 593 KPPGPAGPTRQASQAGPVPRTG-PPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAA 651
Query: 192 CGSSP 196
G P
Sbjct: 652 AGGPP 656
Score = 33.1 bits (74), Expect = 0.26
Identities = 38/135 (28%), Positives = 48/135 (35%), Gaps = 9/135 (6%)
Query: 66 GAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLG 125
G+ G P P AG P + RP P G PG + PP
Sbjct: 431 GSHGQTPSPGALPLGRQTSQQPAGPPAQQ-RPPPQ--GGPPQPGPGPQRQGPPLQQRPPP 487
Query: 126 QGRAG-AGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAAQPQP 184
QG+ +GL P LP RLP+P + A PT +G +A P
Sbjct: 488 QGQQHLSGLGPPAGSPLP----QRLPSPTSAPQQPASQ-AAPPTQGQGRQSRPVAGGPGA 542
Query: 185 PRPARPACGSSPMAE 199
P ARP SP +
Sbjct: 543 PPAARPPASPSPQRQ 557
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 45.8 bits (107), Expect = 4e-05
Identities = 49/185 (26%), Positives = 66/185 (35%), Gaps = 31/185 (16%)
Query: 14 GFPFQKTSHYPTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQTR 73
G P + PT P+QP + + G + P GG P A S R
Sbjct: 501 GSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAP----PAARPPASPSPQR 556
Query: 74 PSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGL 133
+G PQ T +++ +P P +GA PPG GQ R G
Sbjct: 557 QAGPPQATRQTSVSGPAP-------PKASGA--------------PPG---GQQRQGPPQ 592
Query: 134 RPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAAQPQP--PRPARPA 191
+P G + P P+ G TT +P P G + LA +P P PA A
Sbjct: 593 KPPGPAGPTRQASQAGPVPRTG-PPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAA 651
Query: 192 CGSSP 196
G P
Sbjct: 652 AGGPP 656
Score = 33.1 bits (74), Expect = 0.26
Identities = 38/135 (28%), Positives = 48/135 (35%), Gaps = 9/135 (6%)
Query: 66 GAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLG 125
G+ G P P AG P + RP P G PG + PP
Sbjct: 431 GSHGQTPSPGALPLGRQTSQQPAGPPAQQ-RPPPQ--GGPPQPGPGPQRQGPPLQQRPPP 487
Query: 126 QGRAG-AGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAAQPQP 184
QG+ +GL P LP RLP+P + A PT +G +A P
Sbjct: 488 QGQQHLSGLGPPAGSPLP----QRLPSPTSAPQQPASQ-AAPPTQGQGRQSRPVAGGPGA 542
Query: 185 PRPARPACGSSPMAE 199
P ARP SP +
Sbjct: 543 PPAARPPASPSPQRQ 557
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 42.7 bits (99), Expect = 3e-04
Identities = 34/97 (35%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 97 PGPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGT 156
PG A A LR PPG GLG GRA AG RP P P + RLPA
Sbjct: 1198 PGSATAADLR---------PKQPPGRGLGPGRAQAGARP------PAPRSPRLPASTSAA 1242
Query: 157 SSTTDRPCARPTAPRGALRDGLAAQP--QPPRPARPA 191
+ + P ++ + R + A+P PPR PA
Sbjct: 1243 RNASASPRSQSLSRRESPSPSHQARPGVPPPRGVPPA 1279
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 42.4 bits (98), Expect = 4e-04
Identities = 48/179 (26%), Positives = 65/179 (36%), Gaps = 24/179 (13%)
Query: 24 PTPPPEQPEYSSG--AIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQTRPSGAPQFT 81
PTPP P G A G P + +G P H GA + +P+
Sbjct: 1080 PTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGG 1139
Query: 82 TLLALAAGSPWRPWRPGPALAGALRFPGAHGR----LCAPPPPGLGLGQGRAGAGLRPRG 137
G+P P P+ G L P G PP P GL A P+G
Sbjct: 1140 LATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGL------ATPSPKG 1193
Query: 138 AGSLPLPCTARLPAPQLGTSSTTDR-----PCARPTAPRGALRDGLAAQPQPPRPARPA 191
A + P A P+P+ G ++ + + P A P +P+G GLA P PA
Sbjct: 1194 APTTP---AATPPSPKGGLATPSPKGAPTTPAATPPSPKG----GLATPSPKGAPTTPA 1245
Score = 38.5 bits (88), Expect = 0.006
Identities = 53/188 (28%), Positives = 75/188 (39%), Gaps = 23/188 (12%)
Query: 20 TSHYPTPPPEQ--PEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQTRPSGA 77
T+H PTPP + P S+ + GV P +T + P EG T A
Sbjct: 852 TTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPK---ETPTPSVVNLPFP-KEGPATP---A 904
Query: 78 PQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLGQGRAG-AGLRPR 136
P+ L++ + SP + R PA G P G AP PP + G A P+
Sbjct: 905 PKQAPALSMTSSSPKKA-RATPAPKGIPASPSPKG---APTPPAATPPSPKGGPATPSPK 960
Query: 137 GAGSLPLPCTARLPAPQLGTSSTTDR-----PCARPTAPRGA-LRDGLAAQPQPPRPARP 190
A P P A P+P+ G ++ + + P A P +P+G P PP P
Sbjct: 961 WA---PTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPP 1017
Query: 191 ACGSSPMA 198
+ SP A
Sbjct: 1018 SPKGSPAA 1025
Score = 35.0 bits (79), Expect = 0.068
Identities = 47/189 (24%), Positives = 64/189 (33%), Gaps = 33/189 (17%)
Query: 24 PTPPPEQPEYSSGAIMEAAGVDAMPHWG----GQTLEGEWLRPLHPGAEGSQTRPSGAPQ 79
PTPP P G + P W T P P +G+ T P+ P
Sbjct: 940 PTPPAATPPSPKGGPATPS-----PKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPP 994
Query: 80 FTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGA- 138
G P P G A+ P G A P P G A P+G+
Sbjct: 995 SPK------GGPATPSPKGAPTPPAVTPPSPKGSPAATPFPK-GASTPPAATPPSPKGSP 1047
Query: 139 GSLPLPC------TARLPAPQLGTSSTTDR-----PCARPTAPRGALRDGLAAQPQPPRP 187
+ PLP A LP+P+ G ++ + + P A P +P+G A P P
Sbjct: 1048 AATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGG-----PATPSPKGA 1102
Query: 188 ARPACGSSP 196
P + P
Sbjct: 1103 PMPPAATPP 1111
Score = 33.9 bits (76), Expect = 0.15
Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 15/182 (8%)
Query: 24 PTPPPEQPEYSSGAIMEAA--GVDAMPHWGGQTLEGEWLRPLHPGAEGSQTRPSGAPQFT 81
PT P P G + + G P + +G P GA + +P+
Sbjct: 1172 PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGG 1231
Query: 82 TLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGLRP-RGAGS 140
G+P P P+ G P G AP PP + G P +GA
Sbjct: 1232 LATPSPKGAPTTPAATPPSPKGGPATPPPKG---APTPPAATPPSLKGGLATPPHKGA-- 1286
Query: 141 LPLPCTARLPAPQLGTSSTTDR-----PCARPTAPRGAL-RDGLAAQPQPPRPARPACGS 194
P P P+P+ G +++ + P A P +P+G+ P PP P+
Sbjct: 1287 -PNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKG 1345
Query: 195 SP 196
+P
Sbjct: 1346 TP 1347
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 42.0 bits (97), Expect = 6e-04
Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 98 GPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGL---RPRGAGSLPLPCTARLPAPQL 154
G LA +P A G APP G+ + G A + P GSLP P P+
Sbjct: 384 GGYLAPGPPWPPAQGPPLAPPGAGVAVHGGELAAAMTFKHPSREGSLPAPAAR----PRT 439
Query: 155 GTSSTTDRPCARPTAPRGALRDGLAAQPQPPRPARPACGSSPMAEQLALVIG-GTIGGL 212
+ + TD P +RP PRG+ A + + P C ++P IG G IGGL
Sbjct: 440 PSVAYTDCP-SRPRPPRGSSPRTRARRERQADPGAQVCAAAP-------AIGTGRIGGL 490
Score = 30.8 bits (68), Expect = 1.3
Identities = 44/152 (28%), Positives = 58/152 (38%), Gaps = 23/152 (15%)
Query: 23 YPTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQTRPSGAPQFTT 82
Y P P P + G + G H GG+ + HP EGS P+ P+ +
Sbjct: 386 YLAPGPPWPP-AQGPPLAPPGAGVAVH-GGELAAAMTFK--HPSREGSLPAPAARPRTPS 441
Query: 83 LLALAAGSPWRPWRPGPALAGALR----FPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGA 138
+ S RP R A R PGA ++CA P +G GR G GL A
Sbjct: 442 VAYTDCPSRPRPPRGSSPRTRARRERQADPGA--QVCAAAP---AIGTGRIG-GLAEEEA 495
Query: 139 GSLPLPCTARLPAPQLGTSSTTDRPCARPTAP 170
+ P AR +PQ +PC P P
Sbjct: 496 SAGPR--GARPASPQA-------QPCLWPDPP 518
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 41.6 bits (96), Expect = 7e-04
Identities = 56/182 (30%), Positives = 63/182 (34%), Gaps = 22/182 (12%)
Query: 24 PTPPPEQPEYSSGAIMEAAGVDAMPHWGG-QTLEGEWLRPLHPGAEG-------SQTRPS 75
P PP P S I G +P G Q G P PG G Q
Sbjct: 157 PPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLP 216
Query: 76 GAPQFTTLLALAAGSPWRPWRPGPA---LAGALRFPGAHGRLCAPPPPGLGLGQGRAGA- 131
GAP G+P P PGPA G PGA G PPG+ +G GA
Sbjct: 217 GAPG-------QGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAV 269
Query: 132 -GLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCAR-PTAPRGALRDGLAAQPQPPRPAR 189
P G + +P A LP PQ G S P R P G G+ P P
Sbjct: 270 GPKGPPGVDGVGVPGAAGLPGPQ-GPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRG 328
Query: 190 PA 191
PA
Sbjct: 329 PA 330
Score = 35.0 bits (79), Expect = 0.068
Identities = 47/157 (29%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 55 LEGEWLRPLHPGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPA------LAGALRFP 108
L+GE P PG G P G P F + G P +PGPA G P
Sbjct: 75 LKGEPGPPGKPGPRG----PPGPPGFPGKPGM--GKPGLHGQPGPAGPPGFSRMGKAGPP 128
Query: 109 GAHGRLCAPPPPGLGLGQG-RAGAGLR-PRGAGSLPLPCTARLP-------APQLGTSST 159
G G++ P PGL G R GLR P G LP P +P P
Sbjct: 129 GLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQG 188
Query: 160 TDRPCARPTAPRGALRDGLAAQPQPPRPARPACGSSP 196
P P P G QP P P G +P
Sbjct: 189 EPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP 225
Score = 28.9 bits (63), Expect = 4.9
Identities = 42/131 (32%), Positives = 50/131 (38%), Gaps = 22/131 (16%)
Query: 65 PGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPA-LAGALRFPGAHGRLCAPPPPGLG 123
PG +G + P G P G P GP+ LAG PG G A PPG
Sbjct: 375 PGPKG-EAGPGGPP----------GVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPT 423
Query: 124 LGQGRAGAGLRPRG---AGSLPLPCTARLPAPQLGTSSTTDRP----CARPTAPRGALRD 176
+G G RP G AG+L LP Q G + P A P P+G
Sbjct: 424 GPKGEPGFTGRPGGPGVAGALGQKGDLGLPG-QPGLRGPSGIPGLQGPAGPIGPQGL--P 480
Query: 177 GLAAQPQPPRP 187
GL +P P P
Sbjct: 481 GLKGEPGLPGP 491
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 41.6 bits (96), Expect = 7e-04
Identities = 47/160 (29%), Positives = 55/160 (34%), Gaps = 30/160 (18%)
Query: 61 RPLHPGAEGSQTRPSGAPQ-----FTTLLALAAGSPWR--------PWR--PGPALAGAL 105
RP H G P G P +L G P + PW P P +
Sbjct: 377 RPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGP 436
Query: 106 RFPGAHGRLCAPPPPGLGLGQGRAGAGLRP--RGAGSLPLPCTARLPAPQLGTSSTTDRP 163
PG HG PPP LG G+G+ +G G +P P +P P S
Sbjct: 437 HPPGHHG----PPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQP--- 489
Query: 164 CARPTAPRGALRDGLAAQPQPPRPARPACGSSPMAEQLAL 203
P P G L Q QPP P P SS MA L
Sbjct: 490 ---PPPPSGPLPPWQQQQQQPPPPPPP---SSSMASSTPL 523
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 41.6 bits (96), Expect = 7e-04
Identities = 42/157 (26%), Positives = 55/157 (35%), Gaps = 24/157 (15%)
Query: 61 RPLHPGAEGSQTRPSGAPQ-----FTTLLALAAGSPWR--------PWR--PGPALAGAL 105
RP H G P G P +L G P + PW P P +
Sbjct: 377 RPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGP 436
Query: 106 RFPGAHGRLCAPPPPGLGLGQGRAGAGLRP--RGAGSLPLPCTARLPAPQLGTSSTTDRP 163
PG HG PPP LG G+G+ +G G +P P +P P S P
Sbjct: 437 HPPGHHG----PPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPP 492
Query: 164 CARPTAPRGALRDGLAAQPQPPRPARPACGSSPMAEQ 200
P+ P + P PP P+ S+P+ Q
Sbjct: 493 ---PSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQ 526
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 41.6 bits (96), Expect = 7e-04
Identities = 42/157 (26%), Positives = 55/157 (35%), Gaps = 24/157 (15%)
Query: 61 RPLHPGAEGSQTRPSGAPQ-----FTTLLALAAGSPWR--------PWR--PGPALAGAL 105
RP H G P G P +L G P + PW P P +
Sbjct: 377 RPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGP 436
Query: 106 RFPGAHGRLCAPPPPGLGLGQGRAGAGLRP--RGAGSLPLPCTARLPAPQLGTSSTTDRP 163
PG HG PPP LG G+G+ +G G +P P +P P S P
Sbjct: 437 HPPGHHG----PPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPP 492
Query: 164 CARPTAPRGALRDGLAAQPQPPRPARPACGSSPMAEQ 200
P+ P + P PP P+ S+P+ Q
Sbjct: 493 ---PSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQ 526
Score = 35.0 bits (79), Expect = 0.068
Identities = 40/157 (25%), Positives = 52/157 (33%), Gaps = 36/157 (22%)
Query: 16 PFQKTSHYPTPPPEQP-----------EYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLH 64
P+Q+ P PPP + ++ +AG ++P W Q
Sbjct: 499 PWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAA----AS 554
Query: 65 PGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPP---- 120
PGA Q P+ P L P P P P PG+ G + APPPP
Sbjct: 555 PGAPQMQGNPTMVP-----LPPGVQPPLPPGAPPPPPPPP---PGSAGMMYAPPPPPPPP 606
Query: 121 ----GLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQ 153
G AG+ P G P P P PQ
Sbjct: 607 MDPSNFVTMMGMGVAGMPPFGMPPAPPP-----PPPQ 638
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 40.8 bits (94), Expect = 0.001
Identities = 60/188 (31%), Positives = 70/188 (37%), Gaps = 31/188 (16%)
Query: 24 PTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQTRPSGAPQFTTL 83
P PPP Q + + +AA + P + L G PL G+ RP P
Sbjct: 716 PPPPPPQVTSAIATLQQAAAMSFCPQVA-RPLVG----PLALGSPRLVRRPPPGP----- 765
Query: 84 LALAAGSPWRPWRPGPALAGALRFPGA-----HGRLCAPPPPGLGLGQGRAGAGLRPRGA 138
A AA SP P P + GA P A +G L A P G L R RP A
Sbjct: 766 -APAAASPGPP--PPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLSA 822
Query: 139 GSLPLPCTARLPAPQLGT---SSTTDR----PCARPTAPRGALRD----GLAAQPQPPRP 187
LP A P P T SS+T R P AR AP RD G A P
Sbjct: 823 SQPSLPHGA--PGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSASPGAAGGLDPQDS 880
Query: 188 ARPACGSS 195
AR S+
Sbjct: 881 ARSRLSSN 888
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 40.4 bits (93), Expect = 0.002
Identities = 55/212 (25%), Positives = 73/212 (34%), Gaps = 46/212 (21%)
Query: 24 PTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQTRPSGAPQFTTL 83
P PPP +P + + A + +P EGE +P P S P T
Sbjct: 1193 PPPPPAEPPPT-----DLAHLPPLP-----PPEGEARKPAKPPV-------SPKPVLTQP 1235
Query: 84 LALAAGSPWRPWR----PGPALAGALRFPGAHGR----LCAPPPPGLGLGQGRAGAGLRP 135
+ GSP + PGP G+ AHG PPPP +A AGL
Sbjct: 1236 VPKLQGSPTPTSKKVPLPGP---GSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPS 1292
Query: 136 RGAGSLPLPCTARLPAPQL----GTSSTTDRPCARPTAP--------------RGALRDG 177
AG P P AR P L GT + A+P +P A
Sbjct: 1293 GSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAA 1352
Query: 178 LAAQPQPPRPARPACGSSPMAEQLALVIGGTI 209
AA P PP A P + E+ + + +
Sbjct: 1353 AAAPPAPPEGASPGDSARQKLEETSACLAAAL 1384
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/125 (32%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 64 HPGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPG-PALAGALRFPGAHGRLCAPPPPGL 122
H G +G + +P GAP G P P G P GA PG GR+ AP P G
Sbjct: 182 HNGLDGLKGQP-GAPG-------VKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGA 233
Query: 123 GLGQGRAGAGLRPRG-AGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGAL-RDGLAA 180
G G + P G GS P P P+ + + A P PRG + GL+
Sbjct: 234 RGSDGSVGP-VGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSG 292
Query: 181 QPQPP 185
PP
Sbjct: 293 PVGPP 297
Score = 34.7 bits (78), Expect = 0.089
Identities = 44/167 (26%), Positives = 57/167 (34%), Gaps = 19/167 (11%)
Query: 51 GGQTLEGEWLRPLHPGAEGSQ-TRPSGAPQFTTLLALAAGSPWRPWRPGP---------- 99
G + L GE R PG G++ + S P +AG P P PGP
Sbjct: 214 GARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNA 273
Query: 100 ------ALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQ 153
G + PG G + P PG G GA P AG+ LP +P P
Sbjct: 274 GPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPV 333
Query: 154 LGTSSTTDRPCARPTAPRGALRDGLAAQPQPPRPARPACGSSPMAEQ 200
+T R P G+ G + P A P P E+
Sbjct: 334 GAAGATGARGLVGEPGPAGS--KGESGNKGEPGSAGPQGPPGPSGEE 378
Score = 28.9 bits (63), Expect = 4.9
Identities = 34/109 (31%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 87 AAGSPWRPWRPGPALA-------GALRFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGAG 139
AAG PGPA + G FPGA GR P P G+ G G P G
Sbjct: 761 AAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPG----PAGKE 816
Query: 140 SLPLPCTARLPAPQLGTSSTTDRP-CARPTAPRGALRDGLAAQPQPPRP 187
L P + P + G P A P G G A P P P
Sbjct: 817 GLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSG--EAGTAGPPGTPGP 863
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 40.4 bits (93), Expect = 0.002
Identities = 37/121 (30%), Positives = 42/121 (34%), Gaps = 2/121 (1%)
Query: 73 RPSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAG 132
RP+ P A+ WR + GA G H P GLGLG G A A
Sbjct: 924 RPAPGPAPFVPRERASVDRWRRTKGAGPPGGAGLADGFHRYYGPIEPQGLGLGLGEARAA 983
Query: 133 LRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAAQPQPPRPARPAC 192
PRGA PL A P + S P P G + P PP A A
Sbjct: 984 --PRGAAGRPLSPPAAQPPQKPPPSYFAIVRDKEPAEPPAGAFPGFPSPPAPPAAAATAV 1041
Query: 193 G 193
G
Sbjct: 1042 G 1042
Score = 29.3 bits (64), Expect = 3.8
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 15/60 (25%)
Query: 69 GSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLGQGR 128
G P G + LLALA SP+ PGP AG PG GLG R
Sbjct: 5 GGPRGPRGPAKMLLLLALACASPFPEEAPGPGGAGG---------------PGGGLGGAR 49
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 40.0 bits (92), Expect = 0.002
Identities = 44/139 (31%), Positives = 48/139 (34%), Gaps = 7/139 (5%)
Query: 65 PGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFP---GAHGRLCAPPPPG 121
PG G P P T G P P PGP G + P G R PPPP
Sbjct: 218 PGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPV 277
Query: 122 LGLGQ--GRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLA 179
L GQ G+ G P G P+P P P P P P G L L
Sbjct: 278 LFPGQPFGQPPLGPLPPGPPP-PVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLT 336
Query: 180 AQPQPPRPARPACGSSPMA 198
P P P P G+ P A
Sbjct: 337 LAPPPHLPGPPP-GAPPPA 354
Score = 37.4 bits (85), Expect = 0.014
Identities = 42/127 (33%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 75 SGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGLR 134
+G P ++ A G R PG A+ G RFPG G PPP GQ L
Sbjct: 186 AGPPGGSSRAAFPQGGRGRGRFPG-AVPGGDRFPGPAGP--GGPPPPFPAGQTPPRPPLG 242
Query: 135 PRGAGSLPLPCTAR--LPAPQLGTSSTTDR---PCARPTAPRGALRDGLAAQPQPPRPAR 189
P G P P LP P G + DR P P P G G P PP P
Sbjct: 243 PPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLG----PLPPGPPP 298
Query: 190 PACGSSP 196
P G P
Sbjct: 299 PVPGYGP 305
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 39.7 bits (91), Expect = 0.003
Identities = 40/144 (27%), Positives = 53/144 (36%), Gaps = 12/144 (8%)
Query: 24 PTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQTRPSGAPQFTTL 83
P E P ++ A AA A + +L E PG +GS+ AP
Sbjct: 108 PCGEEELPSAAAAAAAAAAAAAATARYSMDSLSSERYYLQSPGPQGSEL---AAPCSLFP 164
Query: 84 LALAAGSPWRPWRPGPALA----GALRFPGAHGRLCAPP-----PPGLGLGQGRAGAGLR 134
AAG+P P P P A G++ PG PP PG G G G G+
Sbjct: 165 YQAAAGAPHGPVYPAPNGARYPYGSMLPPGGFPAAVCPPGRAQFGPGAGAGSGAGGSSGG 224
Query: 135 PRGAGSLPLPCTARLPAPQLGTSS 158
G G+ A L P G ++
Sbjct: 225 GGGPGTYQYSQGAPLYGPYPGAAA 248
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 39.7 bits (91), Expect = 0.003
Identities = 48/152 (31%), Positives = 57/152 (37%), Gaps = 37/152 (24%)
Query: 65 PGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPA------LAGALRFPGAHGRLCAPP 118
PGA G+ RP P A P +PWRPGP A + PG+ R A P
Sbjct: 48 PGAPGALGRPK--PVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATP 105
Query: 119 --------PPGLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAP 170
PP + + G RP G +R P PQ GT D P P
Sbjct: 106 APPRCSRRPPTTTVSRVAPSPG-RPAGLH------RSREPRPQDGTPPPVDTP------P 152
Query: 171 RGALRDGLAAQPQPPRPARPACGSS-PMAEQL 201
R A+P+P RP GS P EQL
Sbjct: 153 R-------TARPRPAFTPRPVVGSERPRQEQL 177
Score = 35.0 bits (79), Expect = 0.068
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 106 RFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCA 165
R PGA G L P P G G +P G L P R P+ + S++ RP A
Sbjct: 46 RPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSAS--RPTA 103
Query: 166 RPTAPRGALRDGLAAQPQ-PPRPARPA 191
P PR + R + P P RPA
Sbjct: 104 TPAPPRCSRRPPTTTVSRVAPSPGRPA 130
>gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo
sapiens]
Length = 145
Score = 39.7 bits (91), Expect = 0.003
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 112 GRLCAPPPPGLGLGQGRAGAGL-RPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAP 170
G C+P PP + +G G RPRG + A LP+ P A PTAP
Sbjct: 3 GVCCSPAPPDEARSRAWSGCGCPRPRGEVRRAVARLAALPSAHHTALHLPPVPAAPPTAP 62
Query: 171 RGALRDGLAAQPQPP-----RPARPACGSSPMAEQLALVIGGTIG 210
G R A + P P P+ ++P+ + GT+G
Sbjct: 63 PGFQRGPGARKRSAPSAMLLEPPHPSAAAAPLQRRRRTPPPGTVG 107
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 39.7 bits (91), Expect = 0.003
Identities = 48/152 (31%), Positives = 57/152 (37%), Gaps = 37/152 (24%)
Query: 65 PGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPA------LAGALRFPGAHGRLCAPP 118
PGA G+ RP P A P +PWRPGP A + PG+ R A P
Sbjct: 48 PGAPGALGRPK--PVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATP 105
Query: 119 --------PPGLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAP 170
PP + + G RP G +R P PQ GT D P P
Sbjct: 106 APPRCSRRPPTTTVSRVAPSPG-RPAGLH------RSREPRPQDGTPPPVDTP------P 152
Query: 171 RGALRDGLAAQPQPPRPARPACGSS-PMAEQL 201
R A+P+P RP GS P EQL
Sbjct: 153 R-------TARPRPAFTPRPVVGSERPRQEQL 177
Score = 35.0 bits (79), Expect = 0.068
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 106 RFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCA 165
R PGA G L P P G G +P G L P R P+ + S++ RP A
Sbjct: 46 RPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSAS--RPTA 103
Query: 166 RPTAPRGALRDGLAAQPQ-PPRPARPA 191
P PR + R + P P RPA
Sbjct: 104 TPAPPRCSRRPPTTTVSRVAPSPGRPA 130
>gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo
sapiens]
Length = 145
Score = 39.7 bits (91), Expect = 0.003
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 112 GRLCAPPPPGLGLGQGRAGAGL-RPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAP 170
G C+P PP + +G G RPRG + A LP+ P A PTAP
Sbjct: 3 GVCCSPAPPDEARSRAWSGCGCPRPRGEVRRAVARLAALPSAHHTALHLPPVPAAPPTAP 62
Query: 171 RGALRDGLAAQPQPP-----RPARPACGSSPMAEQLALVIGGTIG 210
G R A + P P P+ ++P+ + GT+G
Sbjct: 63 PGFQRGPGARKRSAPSAMLLEPPHPSAAAAPLQRRRRTPPPGTVG 107
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 39.7 bits (91), Expect = 0.003
Identities = 48/152 (31%), Positives = 57/152 (37%), Gaps = 37/152 (24%)
Query: 65 PGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPA------LAGALRFPGAHGRLCAPP 118
PGA G+ RP P A P +PWRPGP A + PG+ R A P
Sbjct: 48 PGAPGALGRPK--PVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSASRPTATP 105
Query: 119 --------PPGLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAP 170
PP + + G RP G +R P PQ GT D P P
Sbjct: 106 APPRCSRRPPTTTVSRVAPSPG-RPAGLH------RSREPRPQDGTPPPVDTP------P 152
Query: 171 RGALRDGLAAQPQPPRPARPACGSS-PMAEQL 201
R A+P+P RP GS P EQL
Sbjct: 153 R-------TARPRPAFTPRPVVGSERPRQEQL 177
Score = 35.0 bits (79), Expect = 0.068
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 106 RFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCA 165
R PGA G L P P G G +P G L P R P+ + S++ RP A
Sbjct: 46 RPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPGSAS--RPTA 103
Query: 166 RPTAPRGALRDGLAAQPQ-PPRPARPA 191
P PR + R + P P RPA
Sbjct: 104 TPAPPRCSRRPPTTTVSRVAPSPGRPA 130
>gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo
sapiens]
Length = 145
Score = 39.7 bits (91), Expect = 0.003
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 112 GRLCAPPPPGLGLGQGRAGAGL-RPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAP 170
G C+P PP + +G G RPRG + A LP+ P A PTAP
Sbjct: 3 GVCCSPAPPDEARSRAWSGCGCPRPRGEVRRAVARLAALPSAHHTALHLPPVPAAPPTAP 62
Query: 171 RGALRDGLAAQPQPP-----RPARPACGSSPMAEQLALVIGGTIG 210
G R A + P P P+ ++P+ + GT+G
Sbjct: 63 PGFQRGPGARKRSAPSAMLLEPPHPSAAAAPLQRRRRTPPPGTVG 107
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 39.7 bits (91), Expect = 0.003
Identities = 48/175 (27%), Positives = 64/175 (36%), Gaps = 34/175 (19%)
Query: 24 PTPPPEQPEYSSGAIMEAAGVDAMPHWGGQTLEGEWLRPLHPGAEGSQTRPSGAPQFTTL 83
P PPP+Q + DA G Q P P A + RPS +
Sbjct: 303 PGPPPKQADLP----------DAKDSPGPQ--------PTDPPASEAPDRPSKPER---- 340
Query: 84 LALAAGSPWRPWRPGPALAGALRFPGAHGRLC-APPPPGLGLGQGRAGAG-LRPRGAGSL 141
A+ P P R + GA+ PG L P PG + + + G L+P A
Sbjct: 341 AAMNGADPISPQR----VRGAVEAPGTPKSLIPGPSDPGPAVNRTESPMGALQPDEAEEW 396
Query: 142 PLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAAQPQPPRPARPACGSSP 196
P + PAP + ST+ R R T R QP PP P + S+P
Sbjct: 397 PGRPQSHPPAPPVQAPSTSRRGLIRVTTQRAL------GQPPPPEPTASSMASAP 445
Score = 33.1 bits (74), Expect = 0.26
Identities = 39/123 (31%), Positives = 49/123 (39%), Gaps = 23/123 (18%)
Query: 98 GPALAGA---------LRFPGAHGRLCAPPPPGLG----LGQG-RAGAGLRPRGAGSLPL 143
GP+ GA +R P G+L P G LG+G + G GL G G P
Sbjct: 739 GPSNVGAGSLDISKSLIRNPAESGQLATPSSGAWGSAASLGRGPQGGPGLSRNGVG--PA 796
Query: 144 PCTARL---PAPQLGTSSTTDRPCARPTAPRGAL--RDGLA--AQPQPPRPARPACGSSP 196
P + L P + S + D R R ++ R GL A P P RP GS P
Sbjct: 797 PSLSELDLRPPSPINLSRSIDAALFREHLVRDSVFQRCGLRGLASPPPGGALRPRRGSHP 856
Query: 197 MAE 199
AE
Sbjct: 857 KAE 859
>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
Length = 904
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/137 (26%), Positives = 46/137 (33%), Gaps = 9/137 (6%)
Query: 60 LRPLHPGAEGSQTRPSGAPQFTTLLALAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPP 119
L P PGA G +R S +PQ A S W P A P AP P
Sbjct: 255 LVPRQPGAMGVDSRTSCSPQKAQEANKARPSAWEP--------AAGNSPARASVPAAPNP 306
Query: 120 PGLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLA 179
+ RP + P P ++ P++ SS A P A +
Sbjct: 307 AATSATSVHVRSPARPSESRLAPTPTEGKV-RPRVTNSSPMGWSSAAPCTAAAASHPAVP 365
Query: 180 AQPQPPRPARPACGSSP 196
PRPA P G +P
Sbjct: 366 PSAPDPRPATPQGGGAP 382
Score = 30.0 bits (66), Expect = 2.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 142 PLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAAQPQPPRPARPACGSSPMA 198
P P TA +P+ Q T + P A+P GL ++ +PP P + S A
Sbjct: 474 PSPATAAVPSSQPKTEAPQASPLAKPLQSSSPRVLGLPSRMEPPAPLSTSSTSQASA 530
>gi|169403959 ankyrin repeat domain 53 isoform a [Homo sapiens]
Length = 530
Score = 39.7 bits (91), Expect = 0.003
Identities = 39/127 (30%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Query: 121 GLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSST-TDRPCARPTAPRGALRDGLA 179
G G G G RGA P P + A ++ +T TD +P+ P L D L+
Sbjct: 12 GSGSWHSERGEG---RGARPQPTPSGSMQQANKVSLKATWTDAESKQPSQPLPDLADHLS 68
Query: 180 AQP----QPPRPAR---PACGSSPMAEQLALVIGGT-IGGLLLLLLIGASCCLWRRFCAT 231
AQ +P RPA P SP E I T IG L W RFC
Sbjct: 69 AQATALARPRRPASLTPPRADPSPSKESDQTAIDQTAIGSYYQLFAAAVGNVEWLRFCLN 128
Query: 232 LTYEELP 238
+ E+P
Sbjct: 129 QSLREIP 135
>gi|169403957 ankyrin repeat domain 53 isoform b [Homo sapiens]
Length = 343
Score = 39.7 bits (91), Expect = 0.003
Identities = 39/127 (30%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Query: 121 GLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSST-TDRPCARPTAPRGALRDGLA 179
G G G G RGA P P + A ++ +T TD +P+ P L D L+
Sbjct: 12 GSGSWHSERGEG---RGARPQPTPSGSMQQANKVSLKATWTDAESKQPSQPLPDLADHLS 68
Query: 180 AQP----QPPRPAR---PACGSSPMAEQLALVIGGT-IGGLLLLLLIGASCCLWRRFCAT 231
AQ +P RPA P SP E I T IG L W RFC
Sbjct: 69 AQATALARPRRPASLTPPRADPSPSKESDQTAIDQTAIGSYYQLFAAAVGNVEWLRFCLN 128
Query: 232 LTYEELP 238
+ E+P
Sbjct: 129 QSLREIP 135
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,708,038
Number of Sequences: 37866
Number of extensions: 985464
Number of successful extensions: 7218
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 817
Number of HSP's that attempted gapping in prelim test: 5801
Number of HSP's gapped (non-prelim): 2041
length of query: 267
length of database: 18,247,518
effective HSP length: 100
effective length of query: 167
effective length of database: 14,460,918
effective search space: 2414973306
effective search space used: 2414973306
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.