Guide to the Human Genome
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Name: LOC100134152 Sequence: fasta or formatted (267aa) NCBI GI: 169184624
Description:

PREDICTED: similar to synaptotagmin XV-b

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         38           2
 C cysteine            3.4          9           2
 D aspartate           1.5          4           1
 E glutamate           3.4          9           2
 F phenylalanine       1.9          5           1
 G glycine            12.7         34           2
 H histidine           1.9          5           1
 I isoleucine          1.5          4           1
 K lysine              1.1          3           1
 L leucine            12.4         33           6
 M methionine          1.9          5           1
 N asparagine          0.0          0           0
 P proline            14.2         38           4
 Q glutamine           5.2         14           1
 R arginine            8.6         23           2
 S serine              5.6         15           2
 T threonine           6.7         18           2
 V valine              0.7          2           1
 W tryptophan          1.9          5           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to synaptotagmin XV-b 
SYT15                 0.227   synaptotagmin XV isoform a 
SYT15                 0.227   synaptotagmin XV isoform b 
MUPCDH                0.045   mucin and cadherin-like isoform 1 
PRB3                  0.041   proline-rich protein BstNI subfamily 3 precursor [H...
SYN1                  0.039   synapsin I isoform Ia 
SYN1                  0.039   synapsin I isoform Ib 
TTBK1                 0.034   tau tubulin kinase 1 
NACA                  0.032   nascent polypeptide-associated complex alpha subuni...
PAX1                  0.032   paired box 1 
COL8A2                0.032   collagen, type VIII, alpha 2 
SF1                   0.032   splicing factor 1 isoform 3 
SF1                   0.032   splicing factor 1 isoform 2 
SF1                   0.032   splicing factor 1 isoform 1 
HCN2                  0.030   hyperpolarization activated cyclic nucleotide-gated...
CASKIN1               0.028   CASK interacting protein 1 
COL1A2                0.028   alpha 2 type I collagen 
GRIN2D                0.028   N-methyl-D-aspartate receptor subunit 2D precursor ...
CPSF6                 0.028   cleavage and polyadenylation specific factor 6, 68 ...
EOMES                 0.028   eomesodermin 
LOC100292589          0.028   PREDICTED: hypothetical protein 
LOC100291674          0.028   PREDICTED: hypothetical protein XP_002345936 
LOC100290121          0.028   PREDICTED: hypothetical protein XP_002346879 
LOC100290526          0.028   PREDICTED: hypothetical protein XP_002346804 
LOC100289406          0.028   PREDICTED: hypothetical protein XP_002342721 
LOC100288875          0.028   PREDICTED: hypothetical protein XP_002342673 
PRRT3                 0.028   proline-rich transmembrane protein 3 
MICALL2               0.028   MICAL-like 2 isoform 1 
ANKRD53               0.028   ankyrin repeat domain 53 isoform a 
ANKRD53               0.028   ankyrin repeat domain 53 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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