Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ANKRD53 Sequence: fasta or formatted (343aa) NCBI GI: 169403957
Description:

ankyrin repeat domain 53 isoform b

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [530aa] ankyrin repeat domain 53 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         37           3
 C cysteine            2.6          9           1
 D aspartate           5.8         20           2
 E glutamate           4.1         14           2
 F phenylalanine       4.1         14           1
 G glycine             5.5         19           1
 H histidine           2.9         10           1
 I isoleucine          3.2         11           1
 K lysine              5.5         19           2
 L leucine            10.5         36           2
 M methionine          2.3          8           1
 N asparagine          3.2         11           2
 P proline             6.1         21           2
 Q glutamine           5.8         20           2
 R arginine            5.5         19           3
 S serine              7.6         26           1
 T threonine           5.8         20           2
 V valine              3.8         13           1
 W tryptophan          2.3          8           1
 Y tyrosine            2.3          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat domain 53 isoform b 
ANKRD53               0.868   ankyrin repeat domain 53 isoform a 
ANKRD10               0.091   ankyrin repeat domain 10 
ANK1                  0.076   ankyrin 1 isoform 9 
ANK1                  0.076   ankyrin 1 isoform 1 
ANK1                  0.076   ankyrin 1 isoform 3 
ANK1                  0.076   ankyrin 1 isoform 2 
ANK1                  0.076   ankyrin 1 isoform 4 
RAI14                 0.073   retinoic acid induced 14 isoform d 
RAI14                 0.073   retinoic acid induced 14 isoform c 
RAI14                 0.073   retinoic acid induced 14 isoform b 
RAI14                 0.073   retinoic acid induced 14 isoform a 
RAI14                 0.073   retinoic acid induced 14 isoform a 
RAI14                 0.073   retinoic acid induced 14 isoform a 
ANK2                  0.072   ankyrin 2 isoform 3 
ANK2                  0.072   ankyrin 2 isoform 2 
ANK2                  0.072   ankyrin 2 isoform 1 
ANK3                  0.069   ankyrin 3 isoform 1 
ANKRD28               0.064   ankyrin repeat domain 28 
ASB8                  0.064   ankyrin repeat and SOCS box-containing 8 
ASB3                  0.064   ankyrin repeat and SOCS box-containing protein 3 isof...
ANKRD52               0.063   ankyrin repeat domain 52 
ANKK1                 0.061   ankyrin repeat and kinase domain containing 1 
ANKRA2                0.059   ankyrin repeat, family A (RFXANK-like), 2 
TNNI3K                0.057   TNNI3 interacting kinase isoform b 
TNNI3K                0.057   TNNI3 interacting kinase isoform a 
ANKRD44               0.057   ankyrin repeat domain 44 
ESPN                  0.056   espin 
UACA                  0.056   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.056   uveal autoantigen with coiled-coil domains and ankyr...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press