Guide to the Human Genome
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Name: LOC100290526 Sequence: fasta or formatted (145aa) NCBI GI: 239748791
Description:

PREDICTED: hypothetical protein XP_002346804

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         20           4
 C cysteine            3.4          5           2
 D aspartate           0.7          1           1
 E glutamate           2.1          3           1
 F phenylalanine       1.4          2           1
 G glycine             9.7         14           1
 H histidine           2.8          4           2
 I isoleucine          0.0          0           0
 K lysine              1.4          2           1
 L leucine             8.3         12           2
 M methionine          1.4          2           1
 N asparagine          0.0          0           0
 P proline            20.7         30           3
 Q glutamine           2.8          4           1
 R arginine           13.1         19           4
 S serine              9.0         13           2
 T threonine           4.1          6           1
 V valine              4.1          6           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346804 
LOC100291674          1.000   PREDICTED: hypothetical protein XP_002345936 
LOC100288875          1.000   PREDICTED: hypothetical protein XP_002342673 
NACA                  0.077   nascent polypeptide-associated complex alpha subuni...
WIPF3                 0.060   WAS/WASL interacting protein family, member 3 [Homo...
LOC645321             0.060   PREDICTED: hypothetical protein 
LOC645321             0.060   PREDICTED: hypothetical protein 
MICALL2               0.060   MICAL-like 2 isoform 1 
LOC389333             0.056   hypothetical protein LOC389333 
FLJ22184              0.056   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.056   PREDICTED: hypothetical protein LOC80164 
MLL4                  0.053   myeloid/lymphoid or mixed-lineage leukemia 4 
SAMD1                 0.053   sterile alpha motif domain containing 1 
CCNK                  0.053   cyclin K isoform 1 
LOC100134152          0.053   PREDICTED: similar to synaptotagmin XV-b 
FLJ22184              0.053   PREDICTED: hypothetical protein FLJ22184 
LOC729370             0.053   PREDICTED: hypothetical protein 
TMEM108               0.053   transmembrane protein 108 
TMEM108               0.053   transmembrane protein 108 
MLXIPL                0.049   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.049   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.049   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.049   Williams Beuren syndrome chromosome region 14 isofor...
GRIN2D                0.049   N-methyl-D-aspartate receptor subunit 2D precursor ...
RANBP9                0.049   RAN binding protein 9 
TAF4                  0.049   TBP-associated factor 4 
FMN2                  0.049   formin 2 
IRS2                  0.049   insulin receptor substrate 2 
DDN                   0.049   dendrin 
YY1AP1                0.049   YY1-associated protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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