Search of human proteins with 169184311

Search of human proteins with 169184311

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169184311 PREDICTED: similar to COBW domain containing 1
[Homo sapiens]
         (181 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169184311 PREDICTED: similar to COBW domain containing 1 [Hom...   360   e-100
gi|169177343 PREDICTED: COBW domain containing 7 [Homo sapiens]       358   1e-99
gi|148727351 COBW domain containing 3 [Homo sapiens]                  358   1e-99
gi|223941776 COBW domain containing 1 isoform 2 [Homo sapiens]        356   5e-99
gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens]        356   5e-99
gi|146231952 COBW domain containing 6 [Homo sapiens]                  353   6e-98
gi|33469141 COBW domain-containing protein 2 [Homo sapiens]           352   8e-98
gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens]        309   1e-84
gi|119120938 COBW domain containing 5 [Homo sapiens]                  242   1e-64
gi|239752504 PREDICTED: hypothetical protein [Homo sapiens]            56   1e-08
gi|169163827 PREDICTED: similar to UPF0634 protein KIAA1641 [Hom...    31   0.51 
gi|239741684 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]        31   0.51 
gi|124517695 ankyrin repeat domain 36B [Homo sapiens]                  31   0.51 
gi|60498973 myelin transcription factor 1-like [Homo sapiens]          28   3.3  
gi|224831239 integrin alpha M isoform 1 precursor [Homo sapiens]       28   4.3  
gi|88501734 integrin alpha M isoform 2 precursor [Homo sapiens]        28   4.3  
gi|239753333 PREDICTED: actin, beta-like 3 [Homo sapiens]              28   5.6  
gi|239747898 PREDICTED: actin, beta-like 3 [Homo sapiens]              28   5.6  
gi|239741786 PREDICTED: kappa-actin [Homo sapiens]                     28   5.6  
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ...    28   5.6  
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [...    28   5.6  
gi|153791352 prostate, ovary, testis expressed protein on chromo...    27   7.3  
gi|4503787 fyn-related kinase [Homo sapiens]                           27   7.3  
gi|38788319 guanine nucleotide binding protein-like 1 [Homo sapi...    27   7.3  
gi|134133226 protein expressed in prostate, ovary, testis, and p...    27   9.6  
gi|170295797 carbamoyl-phosphate synthetase 1 isoform c [Homo sa...    27   9.6  
gi|169790915 carbamoyl-phosphate synthetase 1 isoform a precurso...    27   9.6  
gi|21361331 carbamoyl-phosphate synthetase 1 isoform b precursor...    27   9.6  
gi|46048234 nucleolar protein 8 [Homo sapiens]                         27   9.6  

>gi|169184311 PREDICTED: similar to COBW domain containing 1 [Homo
           sapiens]
          Length = 181

 Score =  360 bits (925), Expect = e-100
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60
           MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR
Sbjct: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60

Query: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120
           SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI
Sbjct: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120

Query: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180
           QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT
Sbjct: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180

Query: 181 N 181
           N
Sbjct: 181 N 181


>gi|169177343 PREDICTED: COBW domain containing 7 [Homo sapiens]
          Length = 247

 Score =  358 bits (919), Expect = 1e-99
 Identities = 179/181 (98%), Positives = 181/181 (100%)

Query: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60
           ++HLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR
Sbjct: 27  LKHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 86

Query: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120
           SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI
Sbjct: 87  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 146

Query: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180
           QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT
Sbjct: 147 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 206

Query: 181 N 181
           N
Sbjct: 207 N 207


>gi|148727351 COBW domain containing 3 [Homo sapiens]
          Length = 395

 Score =  358 bits (919), Expect = 1e-99
 Identities = 179/181 (98%), Positives = 181/181 (100%)

Query: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60
           ++HLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR
Sbjct: 175 LKHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 234

Query: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120
           SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI
Sbjct: 235 SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 294

Query: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180
           QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT
Sbjct: 295 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 354

Query: 181 N 181
           N
Sbjct: 355 N 355


>gi|223941776 COBW domain containing 1 isoform 2 [Homo sapiens]
          Length = 359

 Score =  356 bits (914), Expect = 5e-99
 Identities = 178/181 (98%), Positives = 180/181 (99%)

Query: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60
           ++HLTEEKPDGLINEATRQVALAD ILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR
Sbjct: 139 LKHLTEEKPDGLINEATRQVALADAILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 198

Query: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120
           SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI
Sbjct: 199 SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 258

Query: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180
           QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT
Sbjct: 259 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 318

Query: 181 N 181
           N
Sbjct: 319 N 319


>gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens]
          Length = 395

 Score =  356 bits (914), Expect = 5e-99
 Identities = 178/181 (98%), Positives = 180/181 (99%)

Query: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60
           ++HLTEEKPDGLINEATRQVALAD ILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR
Sbjct: 175 LKHLTEEKPDGLINEATRQVALADAILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 234

Query: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120
           SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI
Sbjct: 235 SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 294

Query: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180
           QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT
Sbjct: 295 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 354

Query: 181 N 181
           N
Sbjct: 355 N 355


>gi|146231952 COBW domain containing 6 [Homo sapiens]
          Length = 395

 Score =  353 bits (905), Expect = 6e-98
 Identities = 176/181 (97%), Positives = 180/181 (99%)

Query: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60
           ++HLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTT+RSINGLGQILETQR
Sbjct: 175 LKHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTLRSINGLGQILETQR 234

Query: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120
           SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITF+VPGNAKEEHLNMFI
Sbjct: 235 SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFDVPGNAKEEHLNMFI 294

Query: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180
           QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHEL DLEETPVSWKDDTERT
Sbjct: 295 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELCDLEETPVSWKDDTERT 354

Query: 181 N 181
           N
Sbjct: 355 N 355


>gi|33469141 COBW domain-containing protein 2 [Homo sapiens]
          Length = 395

 Score =  352 bits (904), Expect = 8e-98
 Identities = 176/181 (97%), Positives = 178/181 (98%)

Query: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60
           ++HL EEKPDGLINEATRQVALAD ILINKTDLVPEEDVKKLR TIRSINGLGQILETQR
Sbjct: 175 LKHLAEEKPDGLINEATRQVALADAILINKTDLVPEEDVKKLRATIRSINGLGQILETQR 234

Query: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120
           SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI
Sbjct: 235 SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 294

Query: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180
           QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT
Sbjct: 295 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 354

Query: 181 N 181
           N
Sbjct: 355 N 355


>gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens]
          Length = 376

 Score =  309 bits (791), Expect = 1e-84
 Identities = 159/181 (87%), Positives = 161/181 (88%), Gaps = 19/181 (10%)

Query: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60
           ++HLTEEKPDGLINEATRQVALAD ILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR
Sbjct: 175 LKHLTEEKPDGLINEATRQVALADAILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 234

Query: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120
           S                   SLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI
Sbjct: 235 S-------------------SLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 275

Query: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180
           QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT
Sbjct: 276 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 335

Query: 181 N 181
           N
Sbjct: 336 N 336


>gi|119120938 COBW domain containing 5 [Homo sapiens]
          Length = 347

 Score =  242 bits (618), Expect = 1e-64
 Identities = 131/181 (72%), Positives = 133/181 (73%), Gaps = 48/181 (26%)

Query: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60
           ++HLTEEKPDGLINEATR                             SINGLGQILETQR
Sbjct: 175 LKHLTEEKPDGLINEATR-----------------------------SINGLGQILETQR 205

Query: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120
           S                   SLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI
Sbjct: 206 S-------------------SLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 246

Query: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180
           QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT
Sbjct: 247 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 306

Query: 181 N 181
           N
Sbjct: 307 N 307


>gi|239752504 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 51

 Score = 56.2 bits (134), Expect = 1e-08
 Identities = 25/31 (80%), Positives = 27/31 (87%)

Query: 120 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 150
           IQNLLWEKNVRNKDNHCMEVIRLK   ++ D
Sbjct: 11  IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41


>gi|169163827 PREDICTED: similar to UPF0634 protein KIAA1641 [Homo
           sapiens]
          Length = 475

 Score = 31.2 bits (69), Expect = 0.51
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 124 LWEKNVRNKDNHC----MEVIRLKGLVSIKDK----SQQVIVQGVHELYDLEE 168
           LW++ ++ KDNHC    +++ +LK   S+  K     +++  Q  HE+ +LE+
Sbjct: 37  LWKRLIKLKDNHCEQLRVKIRKLKNKASVLQKRISEKEEIKSQLKHEILELEK 89


>gi|239741684 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
          Length = 1524

 Score = 31.2 bits (69), Expect = 0.51
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 124  LWEKNVRNKDNHC----MEVIRLKGLVSIKDK----SQQVIVQGVHELYDLEE 168
            LW++ ++ KDNHC    +++ +LK   S+  K     +++  Q  HE+ +LE+
Sbjct: 987  LWKRLIKLKDNHCEQLRVKIRKLKNKASVLQKRISEKEEIKSQLKHEILELEK 1039


>gi|124517695 ankyrin repeat domain 36B [Homo sapiens]
          Length = 1121

 Score = 31.2 bits (69), Expect = 0.51
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 124 LWEKNVRNKDNHC----MEVIRLKGLVSIKDK----SQQVIVQGVHELYDLEE 168
           LW++ ++ KDNHC    +++ +LK   S+  K     +++  Q  HE+ +LE+
Sbjct: 584 LWKRLIKLKDNHCEQLRVKIRKLKNKASVLQKRISEKEEIKSQLKHEILELEK 636


>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
          Length = 1184

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 1    MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60
            M  + +   +G+ N+   +    +I  +N+++   E D+ KLRT I ++    + +E + 
Sbjct: 1046 MLTIKQRASNGIENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEEN 1105

Query: 61   SRVDLSNVLDLHAFDSLSGISLQK----KLQHV-PGTQPHLDQSIVTIT 104
              ++  N   LH   +LS   +      +L H+ P  + + D  + T+T
Sbjct: 1106 KVIEQQNESLLHELANLSQSLIHSLANIQLPHMDPINEQNFDAYVTTLT 1154


>gi|224831239 integrin alpha M isoform 1 precursor [Homo sapiens]
          Length = 1153

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 14/73 (19%)

Query: 32  DLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLS---------NVLDLHAFDSLSGI-- 80
           D++PE D + +   IR + G+G    +++SR +L+         +V  ++ F++L  I  
Sbjct: 270 DVIPEADREGV---IRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQN 326

Query: 81  SLQKKLQHVPGTQ 93
            L++K+  + GTQ
Sbjct: 327 QLREKIFAIEGTQ 339


>gi|88501734 integrin alpha M isoform 2 precursor [Homo sapiens]
          Length = 1152

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 14/73 (19%)

Query: 32  DLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLS---------NVLDLHAFDSLSGI-- 80
           D++PE D + +   IR + G+G    +++SR +L+         +V  ++ F++L  I  
Sbjct: 270 DVIPEADREGV---IRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQN 326

Query: 81  SLQKKLQHVPGTQ 93
            L++K+  + GTQ
Sbjct: 327 QLREKIFAIEGTQ 339


>gi|239753333 PREDICTED: actin, beta-like 3 [Homo sapiens]
          Length = 924

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 15/139 (10%)

Query: 25  IILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLS-GISLQ 83
           I+++  TD+   +  K+    + S NG  ++++    R    NVLD     +L+  +  Q
Sbjct: 121 IVMLRDTDVNKRDKQKRTALHLASANGNSEVVKLVLDRRCQLNVLDNKKRTALTKAVQCQ 180

Query: 84  KK------LQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCM 137
           +       L+H  GT P++       T         E   M    LL+  ++ +K+ H +
Sbjct: 181 EDECALMLLEH--GTDPNIPDEYGNTTLHYA--VYNEDKLMAKALLLYGADIESKNKHGL 236

Query: 138 EVIRLKGLVSIKDKSQQVI 156
             +    L+ I ++ QQV+
Sbjct: 237 TPL----LLGIHEQKQQVV 251


>gi|239747898 PREDICTED: actin, beta-like 3 [Homo sapiens]
          Length = 924

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 15/139 (10%)

Query: 25  IILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLS-GISLQ 83
           I+++  TD+   +  K+    + S NG  ++++    R    NVLD     +L+  +  Q
Sbjct: 121 IVMLRDTDVNKRDKQKRTALHLASANGNSEVVKLVLDRRCQLNVLDNKKRTALTKAVQCQ 180

Query: 84  KK------LQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCM 137
           +       L+H  GT P++       T         E   M    LL+  ++ +K+ H +
Sbjct: 181 EDECALMLLEH--GTDPNIPDEYGNTTLHYA--VYNEDKLMAKALLLYGADIESKNKHGL 236

Query: 138 EVIRLKGLVSIKDKSQQVI 156
             +    L+ I ++ QQV+
Sbjct: 237 TPL----LLGIHEQKQQVV 251


>gi|239741786 PREDICTED: kappa-actin [Homo sapiens]
          Length = 924

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 15/139 (10%)

Query: 25  IILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLS-GISLQ 83
           I+++  TD+   +  K+    + S NG  ++++    R    NVLD     +L+  +  Q
Sbjct: 121 IVMLRDTDVNKRDKQKRTALHLASANGNSEVVKLVLDRRCQLNVLDNKKRTALTKAVQCQ 180

Query: 84  KK------LQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCM 137
           +       L+H  GT P++       T         E   M    LL+  ++ +K+ H +
Sbjct: 181 EDECALMLLEH--GTDPNIPDEYGNTTLHYA--VYNEDKLMAKALLLYGADIESKNKHGL 236

Query: 138 EVIRLKGLVSIKDKSQQVI 156
             +    L+ I ++ QQV+
Sbjct: 237 TPL----LLGIHEQKQQVV 251


>gi|93141049 collagen, type XII, alpha 1 short isoform precursor
           [Homo sapiens]
          Length = 1899

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 10/65 (15%)

Query: 67  NVLDLHAFDSLSGISLQKKLQHVP--GTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLL 124
           N LD+  +D   G  LQ ++ + P  GT+P   +SIV     VPGN +  HL   I + L
Sbjct: 784 NSLDVR-WDPAPGPVLQYRVVYSPVDGTRP--SESIV-----VPGNTRMVHLERLIPDTL 835

Query: 125 WEKNV 129
           +  N+
Sbjct: 836 YSVNL 840


>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
            sapiens]
          Length = 3063

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 10/65 (15%)

Query: 67   NVLDLHAFDSLSGISLQKKLQHVP--GTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLL 124
            N LD+  +D   G  LQ ++ + P  GT+P   +SIV     VPGN +  HL   I + L
Sbjct: 1948 NSLDVR-WDPAPGPVLQYRVVYSPVDGTRP--SESIV-----VPGNTRMVHLERLIPDTL 1999

Query: 125  WEKNV 129
            +  N+
Sbjct: 2000 YSVNL 2004


>gi|153791352 prostate, ovary, testis expressed protein on
           chromosome 2 [Homo sapiens]
          Length = 1075

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 15/139 (10%)

Query: 25  IILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSL-SGISLQ 83
           I+++  TD+  ++  K+    + S NG  ++++    R    NVLD     +L   +  Q
Sbjct: 158 IVMLRDTDVNKQDKQKRTALHLASANGNSEVVKLLLDRRCQLNVLDNKKRTALIKAVQCQ 217

Query: 84  KK------LQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCM 137
           +       L+H  GT P++       T         E   M    LL+  ++ +K+ H +
Sbjct: 218 EDECALMLLEH--GTDPNIPDEYGNTTLHYA--IYNEDKLMAKALLLYGADIESKNKHGL 273

Query: 138 EVIRLKGLVSIKDKSQQVI 156
             +    L+ + ++ QQV+
Sbjct: 274 TPL----LLGVHEQKQQVV 288


>gi|4503787 fyn-related kinase [Homo sapiens]
          Length = 505

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 81  SLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVI 140
           SLQ+ LQ+  G++ HL Q +        G A  E  N +I   L  +NV   +++  +V 
Sbjct: 313 SLQEYLQNDTGSKIHLTQQVDMAAQVASGMAYLESRN-YIHRDLAARNVLVGEHNIYKVA 371

Query: 141 RLKGLVSIKDKSQQVIVQGVHELYDLEETPVSW 173
              GL  +     + I +  HE+    + PV W
Sbjct: 372 DF-GLARVFKVDNEDIYESRHEI----KLPVKW 399


>gi|38788319 guanine nucleotide binding protein-like 1 [Homo
           sapiens]
          Length = 607

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVP 35
           +RH     P  L    T ++ LA ++++NK DL P
Sbjct: 197 IRHPVVNFPPALYEYVTGELGLALVLVLNKVDLAP 231


>gi|134133226 protein expressed in prostate, ovary, testis, and
           placenta 2 [Homo sapiens]
          Length = 1075

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 15/139 (10%)

Query: 25  IILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSL-SGISLQ 83
           I+++  TD+  ++  K+    + S NG  ++++    R    NVLD     +L   +  Q
Sbjct: 158 IVMLRDTDVNKKDKQKRTALHLASANGNSEVVKLLLDRRCQLNVLDNKKRTALIKAVQCQ 217

Query: 84  KK------LQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCM 137
           +       L+H  GT P++       T         E   M    LL+  ++ +K+ H +
Sbjct: 218 EDECALMLLEH--GTDPNIPDEYGNTTLHYA--IYNEDKLMAKALLLYGADIESKNKHGL 273

Query: 138 EVIRLKGLVSIKDKSQQVI 156
             +    L+ + ++ QQV+
Sbjct: 274 TPL----LLGVHEQKQQVV 288


>gi|170295797 carbamoyl-phosphate synthetase 1 isoform c [Homo
          sapiens]
          Length = 1049

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 7  EKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSI 49
          E+PDGLI     Q AL   + + K  ++ E  VK L T++ SI
Sbjct: 48 EQPDGLILGMGGQTALNCGVELFKRGVLKEYGVKVLGTSVESI 90


>gi|169790915 carbamoyl-phosphate synthetase 1 isoform a precursor
           [Homo sapiens]
          Length = 1506

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 7   EKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSI 49
           E+PDGLI     Q AL   + + K  ++ E  VK L T++ SI
Sbjct: 505 EQPDGLILGMGGQTALNCGVELFKRGVLKEYGVKVLGTSVESI 547


>gi|21361331 carbamoyl-phosphate synthetase 1 isoform b precursor
           [Homo sapiens]
          Length = 1500

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 7   EKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSI 49
           E+PDGLI     Q AL   + + K  ++ E  VK L T++ SI
Sbjct: 499 EQPDGLILGMGGQTALNCGVELFKRGVLKEYGVKVLGTSVESI 541


>gi|46048234 nucleolar protein 8 [Homo sapiens]
          Length = 1167

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)

Query: 2   RHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRS 61
           R + E  P  L  +   Q    D I  +K+  VP  D +KL+      +G    LET + 
Sbjct: 240 RRVIERPP--LTQQQAAQKRTCDSITPSKSSPVPVSDTQKLKNLPFKTSG----LETAKK 293

Query: 62  RVDLSNVLDLHAFDSL-SGISLQKKLQHVPGTQPHLDQS 99
           R  +S+  D  + D L   I+ ++ LQ    TQP +++S
Sbjct: 294 RNSISDD-DTDSEDELRMMIAKEENLQRT--TQPSINES 329


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,594,858
Number of Sequences: 37866
Number of extensions: 255988
Number of successful extensions: 587
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 29
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.