Guide to the Human Genome
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Name: CPS1 Sequence: fasta or formatted (1506aa) NCBI GI: 169790915
Description:

carbamoyl-phosphate synthetase 1 isoform a precursor

Referenced in:

Mitochondria
Pyrimidine Biosynthesis and Catabolism
Urea Cycle, Nitric Oxide, and Polyamines

Other entries for this name:
alt prot [1049aa] carbamoyl-phosphate synthetase 1 isoform c
alt prot [1500aa] carbamoyl-phosphate synthetase 1 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        115           2
 C cysteine            1.3         20           1
 D aspartate           5.0         75           2
 E glutamate           6.4         97           2
 F phenylalanine       4.1         62           2
 G glycine             7.4        111           2
 H histidine           1.9         29           1
 I isoleucine          6.7        101           2
 K lysine              7.0        105           2
 L leucine             8.7        131           2
 M methionine          2.7         41           2
 N asparagine          4.8         73           3
 P proline             4.8         72           1
 Q glutamine           3.3         50           2
 R arginine            3.8         57           2
 S serine              6.7        101           2
 T threonine           6.0         91           2
 V valine              8.1        122           3
 W tryptophan          1.0         15           1
 Y tyrosine            2.5         38           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbamoyl-phosphate synthetase 1 isoform a precurso... 
CPS1                  0.996   carbamoyl-phosphate synthetase 1 isoform b precursor...
CPS1                  0.693   carbamoyl-phosphate synthetase 1 isoform c 
CAD                   0.476   carbamoylphosphate synthetase 2/aspartate transcarba...
ACACA                 0.013   acetyl-Coenzyme A carboxylase alpha isoform 2 
ACACA                 0.013   acetyl-Coenzyme A carboxylase alpha isoform 4 
ACACA                 0.013   acetyl-Coenzyme A carboxylase alpha isoform 3 
ACACA                 0.013   acetyl-Coenzyme A carboxylase alpha isoform 2 
ACACA                 0.013   acetyl-Coenzyme A carboxylase alpha isoform 1 
MCCC1                 0.012   methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) pr...
PC                    0.011   pyruvate carboxylase precursor 
PC                    0.011   pyruvate carboxylase precursor 
PC                    0.011   pyruvate carboxylase precursor 
PCCA                  0.010   propionyl-Coenzyme A carboxylase, alpha polypeptide ...
PCCA                  0.010   propionyl-Coenzyme A carboxylase, alpha polypeptide...
ACACB                 0.010   acetyl-Coenzyme A carboxylase beta 
GMPS                  0.005   guanine monophosphate synthetase 
GART                  0.004   phosphoribosylglycinamide formyltransferase, phospho...
GART                  0.004   phosphoribosylglycinamide formyltransferase, phosphor...
GART                  0.004   phosphoribosylglycinamide formyltransferase, phosph...
GART                  0.004   phosphoribosylglycinamide formyltransferase, phosph...
ATPGD1                0.003   ATP-grasp domain containing 1 
TMEM25                0.003   transmembrane protein 25 isoform 1 
TMEM25                0.003   transmembrane protein 25 isoform 4 
ABCA6                 0.003   ATP-binding cassette, sub-family A, member 6 
EHD1                  0.003   EH-domain containing 1 
TMEM116               0.002   transmembrane protein 116 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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