Guide to the Human Genome
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Name: CBWD3 Sequence: fasta or formatted (395aa) NCBI GI: 148727351
Description:

COBW domain containing 3

Referenced in:

Additional Enzymes and Related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         18           1
 C cysteine            1.5          6           2
 D aspartate           6.8         27           2
 E glutamate          10.1         40           4
 F phenylalanine       1.8          7           1
 G glycine             6.8         27           2
 H histidine           2.3          9           1
 I isoleucine          7.3         29           2
 K lysine              7.1         28           2
 L leucine            12.4         49           2
 M methionine          1.3          5           1
 N asparagine          4.3         17           1
 P proline             3.0         12           1
 Q glutamine           4.6         18           2
 R arginine            3.3         13           1
 S serine              5.6         22           1
 T threonine           7.1         28           2
 V valine              7.3         29           1
 W tryptophan          1.3          5           1
 Y tyrosine            1.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   COBW domain containing 3 
CBWD6                 0.993   COBW domain containing 6 
CBWD2                 0.980   COBW domain-containing protein 2 
CBWD1                 0.979   COBW domain containing 1 isoform 1 
CBWD1                 0.916   COBW domain containing 1 isoform 3 
CBWD1                 0.848   COBW domain containing 1 isoform 2 
CBWD5                 0.846   COBW domain containing 5 
CBWD7                 0.617   PREDICTED: COBW domain containing 7 
LOC653510             0.439   PREDICTED: similar to COBW domain containing 1 [Hom...
CBWD2                 0.132   PREDICTED: COBW domain containing 2 
LOC653510             0.041   PREDICTED: hypothetical protein 
FAM178A               0.009   hypothetical protein LOC55719 isoform 1 
FAM178A               0.009   hypothetical protein LOC55719 isoform 2 
EFTUD2                0.009   elongation factor Tu GTP binding domain containing ...
EFTUD2                0.009   elongation factor Tu GTP binding domain containing ...
LOC730658             0.008   PREDICTED: similar to UPF0634 protein KIAA1641 [Hom...
ANKRD36               0.008   PREDICTED: ankyrin repeat domain 36 
ANKRD36B              0.008   ankyrin repeat domain 36B 
C17orf75              0.008   hypothetical protein LOC64149 
ETS1                  0.007   v-ets erythroblastosis virus E26 oncogene homolog 1...
ETS1                  0.007   v-ets erythroblastosis virus E26 oncogene homolog 1 i...
ETS1                  0.007   v-ets erythroblastosis virus E26 oncogene homolog 1...
LOC100293185          0.007   PREDICTED: hypothetical protein 
LOC100290807          0.007   PREDICTED: hypothetical protein XP_002348131 
LOC100289664          0.007   PREDICTED: hypothetical protein XP_002343801 
DHX30                 0.007   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 2 ...
DHX30                 0.007   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 1 ...
SLC12A1               0.005   sodium potassium chloride cotransporter 2 
LRRFIP2               0.005   leucine rich repeat (in FLII) interacting protein 2 i...
ABCA8                 0.005   ATP-binding cassette, sub-family A member 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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