Guide to the Human Genome
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Name: LOC730658 Sequence: fasta or formatted (475aa) NCBI GI: 169163827
Description:

PREDICTED: similar to UPF0634 protein KIAA1641

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         24           2
 C cysteine            3.2         15           1
 D aspartate           4.4         21           2
 E glutamate          11.4         54           2
 F phenylalanine       2.1         10           2
 G glycine             1.5          7           2
 H histidine           3.4         16           1
 I isoleucine          4.6         22           1
 K lysine             13.5         64           3
 L leucine            13.1         62           3
 M methionine          1.7          8           1
 N asparagine          5.5         26           2
 P proline             0.8          4           1
 Q glutamine           7.4         35           3
 R arginine            6.5         31           2
 S serine              5.9         28           2
 T threonine           3.8         18           2
 V valine              3.8         18           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to UPF0634 protein KIAA1641 [Hom... 
ANKRD36               0.916   PREDICTED: ankyrin repeat domain 36 
ANKRD36B              0.915   ankyrin repeat domain 36B 
LOC400986             0.878   PREDICTED: protein immuno-reactive with anti-PTH po...
LOC400986             0.878   PREDICTED: protein immuno-reactive with anti-PTH po...
ANKRD62               0.464   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.464   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.462   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
ANKRD26               0.433   ankyrin repeat domain 26 
CCDC144A              0.338   coiled-coil domain containing 144A 
ANKRD30A              0.314   ankyrin repeat domain 30A 
ANKRD30B              0.306   ankyrin repeat domain 30B 
ANKRD20A5             0.240   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.240   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A3             0.220   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.220   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.220   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.216   ankyrin repeat domain 20 family, member A4 
ANKRD18B              0.178   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.178   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.178   PREDICTED: ankyrin repeat domain 18B 
ANKRD18A              0.166   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.166   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.166   PREDICTED: ankyrin repeat domain 18A 
LOC100293353          0.108   PREDICTED: similar to Coiled-coil domain-containing...
LOC100287980          0.108   PREDICTED: similar to Coiled-coil domain-containing...
LOC100287980          0.108   PREDICTED: hypothetical protein XP_002342885 
LOC100131031          0.091   PREDICTED: hypothetical protein LOC100131031 
LOC100131031          0.091   PREDICTED: hypothetical protein LOC100131031 
LOC100131031          0.091   PREDICTED: hypothetical protein LOC100131031 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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