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Search of human proteins with 111038124
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|111038124 succinate dehydrogenase complex assembly factor 1
[Homo sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|111038124 succinate dehydrogenase complex assembly factor 1 [... 236 3e-63
gi|207028781 zinc finger and SCAN domain containing 5B [Homo sap... 33 0.049
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 32 0.083
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 32 0.083
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 32 0.083
gi|23510448 minichromosome maintenance complex component 5 [Homo... 31 0.18
gi|21361517 UBX domain protein 1 [Homo sapiens] 30 0.41
gi|27414491 coiled-coil domain containing 28A [Homo sapiens] 30 0.41
gi|38570054 LYR motif containing 4 [Homo sapiens] 30 0.54
gi|157738639 tensin 4 [Homo sapiens] 30 0.54
gi|42558258 F-box protein 33 [Homo sapiens] 29 0.70
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 28 1.2
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 28 1.2
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 28 1.2
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 28 1.2
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 28 1.2
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 28 1.2
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 28 1.2
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 28 1.2
gi|219283190 MAX dimerization protein 3 isoform b [Homo sapiens] 28 1.6
gi|19923391 homeobox D3 [Homo sapiens] 28 2.0
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 28 2.0
gi|20162572 necdin-like 2 [Homo sapiens] 28 2.0
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 28 2.0
gi|4504253 H2A histone family, member X [Homo sapiens] 27 2.7
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 27 2.7
gi|10800132 histone cluster 1, H2ag [Homo sapiens] 27 2.7
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens] 27 2.7
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 27 2.7
gi|4504239 histone cluster 1, H2ai [Homo sapiens] 27 2.7
>gi|111038124 succinate dehydrogenase complex assembly factor 1
[Homo sapiens]
Length = 115
Score = 236 bits (602), Expect = 3e-63
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MSRHSRLQRQVLSLYRDLLRAGRGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQ 60
MSRHSRLQRQVLSLYRDLLRAGRGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQ
Sbjct: 1 MSRHSRLQRQVLSLYRDLLRAGRGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQ 60
Query: 61 LQLLRSGHATAMGAFVRPRAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETRPDGR 115
LQLLRSGHATAMGAFVRPRAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETRPDGR
Sbjct: 61 LQLLRSGHATAMGAFVRPRAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETRPDGR 115
>gi|207028781 zinc finger and SCAN domain containing 5B [Homo
sapiens]
Length = 495
Score = 33.1 bits (74), Expect = 0.049
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 23 RGKPGAEARVRAEFRQ-HAGLPRSDVLRIEYLYRRGRR--QLQLLRSGHATAMGAFVRPR 79
R K G E + RA A P + V+ E L G R L L + + +
Sbjct: 250 RAKEGKEPQKRASVENVDADTPSACVVEREALTHSGNRGDALNLSSPKRSKPDASSISQE 309
Query: 80 APTGEPGGVGSQPDDGDSPRNPHDSTG--APETRPDGR 115
P GE VG++ G + NP S G P + PDG+
Sbjct: 310 EPQGEATPVGNRESPGQAEINPVHSPGPAGPVSHPDGQ 347
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 32.3 bits (72), Expect = 0.083
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 24 GKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQLQLLRSGHATAMGAFVRPRAPTG 83
G PG + F G V E + +Q +L G MG RP P G
Sbjct: 358 GPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRP-GPLG 416
Query: 84 EPGGVGSQPDDGD----SPRNPHDSTGAP 108
+PG G + + GD PR P TG P
Sbjct: 417 QPGSPGLKGESGDLGPQGPRGPQGLTGPP 445
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 32.3 bits (72), Expect = 0.083
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 24 GKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQLQLLRSGHATAMGAFVRPRAPTG 83
G PG + F G V E + +Q +L G MG RP P G
Sbjct: 337 GPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRP-GPLG 395
Query: 84 EPGGVGSQPDDGD----SPRNPHDSTGAP 108
+PG G + + GD PR P TG P
Sbjct: 396 QPGSPGLKGESGDLGPQGPRGPQGLTGPP 424
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 32.3 bits (72), Expect = 0.083
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 24 GKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQLQLLRSGHATAMGAFVRPRAPTG 83
G PG + F G V E + +Q +L G MG RP P G
Sbjct: 444 GPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRP-GPLG 502
Query: 84 EPGGVGSQPDDGD----SPRNPHDSTGAP 108
+PG G + + GD PR P TG P
Sbjct: 503 QPGSPGLKGESGDLGPQGPRGPQGLTGPP 531
>gi|23510448 minichromosome maintenance complex component 5 [Homo
sapiens]
Length = 734
Score = 31.2 bits (69), Expect = 0.18
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 2 SRHSRLQRQVLSLYRDLLRAGRGKPGAEARVRAEFRQHAGLPRS------------DVLR 49
+R S+LQR+ R R G + G + R E ++H L D
Sbjct: 26 ARKSQLQRRFKEFLRQY-RVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDL 84
Query: 50 IEYLYRRGRRQLQLLRSGHATAMGAFVRPRAPTGE 84
+YLY++ LQLL RPR P+GE
Sbjct: 85 ADYLYKQPAEHLQLLEEAAKEVADEVTRPR-PSGE 118
>gi|21361517 UBX domain protein 1 [Homo sapiens]
Length = 312
Score = 30.0 bits (66), Expect = 0.41
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
Query: 3 RHSRLQRQVLSLYRDLLRAGRGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYR-RGRRQL 61
R R +R+ L R R G+ A R++ + + A R E R R R ++
Sbjct: 109 REEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKAEELAARQRVREKI 168
Query: 62 QLLRSGHATAMGAFVRPRAP--TGEPGGVGSQPDDGDSPRNPHDSTGAPETRPDG 114
+ ++ A G V + P EPG V S P + +D PDG
Sbjct: 169 ERDKAERAKKYGGSVGSQPPPVAPEPGPVPSSPSQEPPTKREYDQCRIQVRLPDG 223
>gi|27414491 coiled-coil domain containing 28A [Homo sapiens]
Length = 274
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 26 PGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQLQLLRSGHATAMGAFVRPRAPTGEP 85
P AE R ++ AGLP R+ YL R R+Q +L RSG GA + A E
Sbjct: 2 PRAEPRATLGEQEKAGLPLG-AWRL-YLLRHFRKQTELRRSGSRDVTGALLVAAAVASEA 59
Query: 86 GG 87
G
Sbjct: 60 VG 61
>gi|38570054 LYR motif containing 4 [Homo sapiens]
Length = 91
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 10 QVLSLYRDLLRAGRG------KPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQLQL 63
QVLSLYR +LR + + A R+R FR++ + D + I+ L + +R L +
Sbjct: 8 QVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNV--KDPVEIQTLVNKAKRDLGV 65
Query: 64 LR 65
+R
Sbjct: 66 IR 67
>gi|157738639 tensin 4 [Homo sapiens]
Length = 715
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 42 LPRSDVLRIEYLYRRGRRQLQLLRSGHATAMGAFVRPRAPTGEPGGVGS-----QPDDGD 96
L S V + Y++ + L S H ++ + P + +GS +P D
Sbjct: 274 LSASPVSDVSYMFGSSQSLLHSSNSSHQSSSRSLESPANSSSSLHSLGSVSLCTRPSDFQ 333
Query: 97 SPRNPHDSTGAPET 110
+PRNP + G P T
Sbjct: 334 APRNPTLTMGQPRT 347
>gi|42558258 F-box protein 33 [Homo sapiens]
Length = 555
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 1 MSRHSRLQRQVLSLYRDLLRAGRGKPGAEARVR 33
++R RL+ Q L R LLR RG+PGA +R R
Sbjct: 24 VARWRRLRLQQLRRLRGLLRVLRGRPGAGSRRR 56
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 59 RQLQLLRSGHATAMGAFVRPRAPTGEPGGVGSQPDDGD-SPRNPHDSTGAP 108
+Q ++ G MG RP P G PG G++ + GD P+ P G P
Sbjct: 533 QQARIALRGPPGPMGLTGRP-GPVGGPGSSGAKGESGDPGPQGPRGVQGPP 582
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 76 VRPRAPTGEPGGVGSQ-PDDGDSPRNPHDSTGA 107
V P P G PG G Q P+ D P+ P S G+
Sbjct: 1227 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGS 1259
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 59 RQLQLLRSGHATAMGAFVRPRAPTGEPGGVGSQPDDGD-SPRNPHDSTGAP 108
+Q ++ G MG RP P G PG G++ + GD P+ P G P
Sbjct: 482 QQARIALRGPPGPMGLTGRP-GPVGGPGSSGAKGESGDPGPQGPRGVQGPP 531
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 76 VRPRAPTGEPGGVGSQ-PDDGDSPRNPHDSTGA 107
V P P G PG G Q P+ D P+ P S G+
Sbjct: 1176 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGS 1208
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 59 RQLQLLRSGHATAMGAFVRPRAPTGEPGGVGSQPDDGD-SPRNPHDSTGAP 108
+Q ++ G MG RP P G PG G++ + GD P+ P G P
Sbjct: 521 QQARIALRGPPGPMGLTGRP-GPVGGPGSSGAKGESGDPGPQGPRGVQGPP 570
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 76 VRPRAPTGEPGGVGSQ-PDDGDSPRNPHDSTGA 107
V P P G PG G Q P+ D P+ P S G+
Sbjct: 1215 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGS 1247
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 78 PRAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETRPD 113
P+ GEPG GS+ D GD+ P +G P + D
Sbjct: 476 PQGALGEPGKQGSRGDPGDA--GPRGDSGQPGPKGD 509
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 78 PRAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETRPD 113
P+ GEPG GS+ D GD+ P +G P + D
Sbjct: 476 PQGALGEPGKQGSRGDPGDA--GPRGDSGQPGPKGD 509
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 78 PRAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETRPD 113
P+ GEPG GS+ D GD+ P +G P + D
Sbjct: 476 PQGALGEPGKQGSRGDPGDA--GPRGDSGQPGPKGD 509
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 28.5 bits (62), Expect = 1.2
Identities = 35/111 (31%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 3 RHSRLQRQVLSLYRDLLRAGRGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQLQ 62
R + LQ +VL L A RG+ E + L R + L E RR+
Sbjct: 64 RTAELQARVLRL-----EAERGEQQMETAI---------LGRVNQLLDEKWKLHSRRR-- 107
Query: 63 LLRSGHATAMGAFVRP--RAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETR 111
R T+ G P + PTG PG GS D G S P G P TR
Sbjct: 108 --REAPKTSPGCNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQPGTR 156
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 28.5 bits (62), Expect = 1.2
Identities = 35/111 (31%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 3 RHSRLQRQVLSLYRDLLRAGRGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQLQ 62
R + LQ +VL L A RG+ E + L R + L E RR+
Sbjct: 64 RTAELQARVLRL-----EAERGEQQMETAI---------LGRVNQLLDEKWKLHSRRR-- 107
Query: 63 LLRSGHATAMGAFVRP--RAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETR 111
R T+ G P + PTG PG GS D G S P G P TR
Sbjct: 108 --REAPKTSPGCNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQPGTR 156
>gi|219283190 MAX dimerization protein 3 isoform b [Homo sapiens]
Length = 193
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 58 RRQLQLLRSGHATAMGAFVRPRAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETRPDGR 115
+RQL+ LR A R RA + + G+ S+ D D P+++ G P RP GR
Sbjct: 131 QRQLEQLRGLAGAAERE--RLRADSLDSSGLSSERSDSDQVL-PNENGGTPNHRPTGR 185
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 73 GAFVRPRAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETRP 112
G+ +RP + GG GSQP +S + P P T P
Sbjct: 88 GSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLP 127
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 76 VRPRAPTGEPGGVGSQPDDG-------DSPRNPHDSTG 106
V R P G PGG G + D G D P P +TG
Sbjct: 953 VGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTG 990
>gi|20162572 necdin-like 2 [Homo sapiens]
Length = 304
Score = 27.7 bits (60), Expect = 2.0
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 23 RGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRGRRQLQLLRSGHATAMGAFVRPRAPT 82
RG+ G +A ++ H+G P + R ++LR G A AP+
Sbjct: 8 RGRSGGQAERDRDW-SHSGNPGAS---------RAGEDARVLRDGFAE--------EAPS 49
Query: 83 GEPGGVGSQPDDGDSPRNPHDSTGAPETRP 112
G GSQ G SP+ + AP P
Sbjct: 50 TSRGPGGSQGSQGPSPQGARRAQAAPAVGP 79
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 77 RPRAPTGEPGGVGSQPDDGDSPRNPHDSTGAPETRP 112
RP P G+P G P G+ + P G PE RP
Sbjct: 49 RPPPPPGKPQG--PPPQGGNQSQGPPPPPGKPEGRP 82
>gi|4504253 H2A histone family, member X [Homo sapiens]
Length = 143
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 21 AGRGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRG 57
+GRGK G +AR +A+ R + V R+ L R+G
Sbjct: 2 SGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKG 38
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 37 RQHAGLPRSDVLRIEYLYRRGRRQLQLLRSGHATAMGAFVRP----RAPTGEPGGVGSQP 92
++H G DV + + + RR + L + A A+ VRP RAP +P + +
Sbjct: 48 QEHNGEQHHDVDKGQVTGGQHRRAVARLPAEPAHAVPHPVRPAARLRAPARDPVPLAGRQ 107
Query: 93 DDGDSPRNPHDSTGAPETRPDGR 115
G +PR P P R R
Sbjct: 108 RAGAAPRGPGGPARTPAVRAGRR 130
>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
Length = 130
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 21 AGRGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRG 57
+GRGK G +AR +A+ R + V R+ L R+G
Sbjct: 2 SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKG 38
>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
Length = 130
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 21 AGRGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRG 57
+GRGK G +AR +A+ R + V R+ L R+G
Sbjct: 2 SGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKG 38
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 67 GHATAMG--AFVRPRAPTGEPGGVGSQPDDGDS------------PRNPHDSTGAPETRP 112
GH A G + P G+PG G+Q D GD + P G P T
Sbjct: 572 GHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSK 631
Query: 113 DGR 115
DG+
Sbjct: 632 DGQ 634
>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
Length = 130
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 21 AGRGKPGAEARVRAEFRQHAGLPRSDVLRIEYLYRRG 57
+GRGK G +AR +A+ R + V R+ L R+G
Sbjct: 2 SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKG 38
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,343,675
Number of Sequences: 37866
Number of extensions: 258610
Number of successful extensions: 1441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 265
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.