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Name: SCN10A Sequence: fasta or formatted (1956aa) NCBI GI: 110835710
Description:

sodium channel, voltage-gated, type X, alpha

Referenced in:

Sodium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1        120           2
 C cysteine            2.0         40           2
 D aspartate           5.1         99           2
 E glutamate           6.1        119           3
 F phenylalanine       6.9        135           2
 G glycine             5.6        109           3
 H histidine           1.5         30           2
 I isoleucine          7.0        136           3
 K lysine              5.1        100           3
 L leucine            10.6        207           3
 M methionine          2.7         53           2
 N asparagine          4.4         86           2
 P proline             5.1         99           3
 Q glutamine           3.3         64           2
 R arginine            4.6         89           2
 S serine              7.6        149           3
 T threonine           5.8        113           2
 V valine              6.5        128           3
 W tryptophan          1.6         32           1
 Y tyrosine            2.5         48           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sodium channel, voltage-gated, type X, alpha 
SCN5A                 0.602   voltage-gated sodium channel type V alpha isoform c...
SCN5A                 0.601   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.601   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.596   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.590   voltage-gated sodium channel type V alpha isoform d...
SCN5A                 0.584   voltage-gated sodium channel type V alpha isoform e...
SCN2A                 0.535   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.535   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.535   sodium channel, voltage-gated, type II, alpha isofor...
SCN3A                 0.533   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.533   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.532   sodium channel, voltage-gated, type III, alpha isof...
SCN1A                 0.530   sodium channel, voltage-gated, type I, alpha 
SCN9A                 0.526   sodium channel, voltage-gated, type IX, alpha 
SCN8A                 0.520   sodium channel, voltage gated, type VIII, alpha [Homo...
SCN4A                 0.392   voltage-gated sodium channel type 4 alpha 
SCN11A                0.334   sodium channel, voltage-gated, type XI, alpha [Homo...
SCN7A                 0.260   sodium channel, voltage-gated, type VII, alpha [Hom...
LOC100294386          0.249   PREDICTED: similar to sodium channel, voltage-gated...
CACNA1I               0.127   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1G               0.103   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.103   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.103   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.102   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.102   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.102   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.102   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.102   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1H               0.102   calcium channel, voltage-dependent, T type, alpha 1H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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