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Name: SCN7A Sequence: fasta or formatted (1682aa) NCBI GI: 111378393
Description:

sodium channel, voltage-gated, type VII, alpha

Referenced in:

Sodium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         77           3
 C cysteine            2.4         40           2
 D aspartate           4.3         73           2
 E glutamate           5.5         93           4
 F phenylalanine       7.6        128           2
 G glycine             5.1         86           2
 H histidine           1.6         27           1
 I isoleucine          8.9        149           2
 K lysine              6.9        116           3
 L leucine            11.5        193           3
 M methionine          3.6         61           2
 N asparagine          5.0         84           2
 P proline             3.7         62           2
 Q glutamine           3.1         52           2
 R arginine            3.6         60           2
 S serine              6.5        109           4
 T threonine           4.6         78           3
 V valine              6.4        108           3
 W tryptophan          1.8         30           1
 Y tyrosine            3.3         56           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sodium channel, voltage-gated, type VII, alpha [Hom... 
SCN4A                 0.469   voltage-gated sodium channel type 4 alpha 
SCN9A                 0.409   sodium channel, voltage-gated, type IX, alpha 
SCN2A                 0.391   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.391   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.391   sodium channel, voltage-gated, type II, alpha isofor...
SCN3A                 0.381   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.380   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.380   sodium channel, voltage-gated, type III, alpha isof...
SCN1A                 0.379   sodium channel, voltage-gated, type I, alpha 
SCN8A                 0.368   sodium channel, voltage gated, type VIII, alpha [Homo...
SCN11A                0.338   sodium channel, voltage-gated, type XI, alpha [Homo...
SCN5A                 0.331   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.326   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.325   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.325   voltage-gated sodium channel type V alpha isoform c...
SCN5A                 0.316   voltage-gated sodium channel type V alpha isoform d...
SCN5A                 0.309   voltage-gated sodium channel type V alpha isoform e...
SCN10A                0.301   sodium channel, voltage-gated, type X, alpha 
LOC100294386          0.189   PREDICTED: similar to sodium channel, voltage-gated...
CACNA1C               0.114   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.113   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.113   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.113   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.113   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.113   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.113   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.113   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.112   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.112   calcium channel, voltage-dependent, L type, alpha 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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