SCN9A 29409

Name: SCN9A	Sequence: fasta or formatted (1977aa)		NCBI GI: 4506813
Description: sodium channel, voltage-gated, type IX, alpha		Referenced in: Sodium Channels
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 108 5 C cysteine 1.9 37 2 D aspartate 4.9 97 3 E glutamate 6.6 131 2 F phenylalanine 6.5 129 2 G glycine 5.1 101 2 H histidine 1.2 24 2 I isoleucine 7.4 147 3 K lysine 6.7 133 3 L leucine 10.2 202 3 M methionine 3.5 70 2 N asparagine 5.0 98 2 P proline 3.9 78 3 Q glutamine 2.7 53 2 R arginine 4.7 92 2 S serine 8.3 165 4 T threonine 4.7 92 3 V valine 6.5 129 3 W tryptophan 1.4 27 2 Y tyrosine 3.2 64 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sodium channel, voltage-gated, type IX, alpha SCN2A 0.785 sodium channel, voltage-gated, type II, alpha isofor... SCN2A 0.785 sodium channel, voltage-gated, type II, alpha isofor... SCN2A 0.785 sodium channel, voltage-gated, type II, alpha isofor... SCN1A 0.767 sodium channel, voltage-gated, type I, alpha SCN3A 0.765 sodium channel, voltage-gated, type III, alpha isof... SCN3A 0.745 sodium channel, voltage-gated, type III, alpha isof... SCN3A 0.745 sodium channel, voltage-gated, type III, alpha isof... SCN8A 0.696 sodium channel, voltage gated, type VIII, alpha [Homo... SCN5A 0.597 voltage-gated sodium channel type V alpha isoform f... SCN5A 0.595 voltage-gated sodium channel type V alpha isoform b ... SCN5A 0.594 voltage-gated sodium channel type V alpha isoform a ... SCN5A 0.593 voltage-gated sodium channel type V alpha isoform c... SCN5A 0.584 voltage-gated sodium channel type V alpha isoform d... SCN5A 0.576 voltage-gated sodium channel type V alpha isoform e... SCN10A 0.526 sodium channel, voltage-gated, type X, alpha SCN4A 0.456 voltage-gated sodium channel type 4 alpha SCN7A 0.352 sodium channel, voltage-gated, type VII, alpha [Hom... SCN11A 0.326 sodium channel, voltage-gated, type XI, alpha [Homo... LOC100294386 0.246 PREDICTED: similar to sodium channel, voltage-gated... CACNA1S 0.103 calcium channel, voltage-dependent, L type, alpha 1... CACNA1D 0.101 calcium channel, voltage-dependent, L type, alpha 1... CACNA1D 0.100 calcium channel, voltage-dependent, L type, alpha 1... CACNA1D 0.100 calcium channel, voltage-dependent, L type, alpha 1D ... CACNA1I 0.081 calcium channel, voltage-dependent, T type, alpha 1I... CACNA1I 0.081 calcium channel, voltage-dependent, T type, alpha 1I... CACNA1H 0.081 calcium channel, voltage-dependent, T type, alpha 1H... CACNA1C 0.080 calcium channel, voltage-dependent, L type, alpha 1... CACNA1H 0.080 calcium channel, voltage-dependent, T type, alpha 1H... CACNA1C 0.080 calcium channel, voltage-dependent, L type, alpha 1... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.