SCN1A 1618

Name: SCN1A	Sequence: fasta or formatted (1998aa)		NCBI GI: 115583677
Description: sodium channel, voltage-gated, type I, alpha		Referenced in: Sodium Channels
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.6 111 3 C cysteine 1.8 36 2 D aspartate 5.0 100 3 E glutamate 6.8 136 2 F phenylalanine 7.1 142 3 G glycine 5.2 104 2 H histidine 1.2 23 1 I isoleucine 7.3 145 3 K lysine 5.9 117 3 L leucine 10.0 199 3 M methionine 3.5 70 2 N asparagine 5.3 105 2 P proline 3.7 74 2 Q glutamine 3.1 62 2 R arginine 4.7 93 2 S serine 7.4 148 5 T threonine 5.4 108 3 V valine 6.9 137 3 W tryptophan 1.4 27 2 Y tyrosine 3.1 61 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sodium channel, voltage-gated, type I, alpha SCN2A 0.873 sodium channel, voltage-gated, type II, alpha isofor... SCN2A 0.873 sodium channel, voltage-gated, type II, alpha isofor... SCN2A 0.872 sodium channel, voltage-gated, type II, alpha isofor... SCN3A 0.841 sodium channel, voltage-gated, type III, alpha isof... SCN3A 0.817 sodium channel, voltage-gated, type III, alpha isof... SCN3A 0.816 sodium channel, voltage-gated, type III, alpha isof... SCN9A 0.758 sodium channel, voltage-gated, type IX, alpha SCN8A 0.743 sodium channel, voltage gated, type VIII, alpha [Homo... SCN5A 0.601 voltage-gated sodium channel type V alpha isoform f... SCN5A 0.597 voltage-gated sodium channel type V alpha isoform b ... SCN5A 0.597 voltage-gated sodium channel type V alpha isoform a ... SCN5A 0.596 voltage-gated sodium channel type V alpha isoform c... SCN5A 0.584 voltage-gated sodium channel type V alpha isoform d... SCN5A 0.578 voltage-gated sodium channel type V alpha isoform e... SCN10A 0.523 sodium channel, voltage-gated, type X, alpha SCN4A 0.459 voltage-gated sodium channel type 4 alpha SCN7A 0.322 sodium channel, voltage-gated, type VII, alpha [Hom... SCN11A 0.316 sodium channel, voltage-gated, type XI, alpha [Homo... LOC100294386 0.247 PREDICTED: similar to sodium channel, voltage-gated... CACNA1I 0.078 calcium channel, voltage-dependent, T type, alpha 1I... CACNA1I 0.078 calcium channel, voltage-dependent, T type, alpha 1I... CACNA1G 0.077 voltage-dependent calcium channel alpha 1G subunit i... CACNA1G 0.077 voltage-dependent calcium channel alpha 1G subunit i... CACNA1G 0.077 voltage-dependent calcium channel alpha 1G subunit i... CACNA1G 0.077 voltage-dependent calcium channel alpha 1G subunit i... CACNA1G 0.077 voltage-dependent calcium channel alpha 1G subunit i... CACNA1G 0.077 voltage-dependent calcium channel alpha 1G subunit i... CACNA1G 0.077 voltage-dependent calcium channel alpha 1G subunit i... CACNA1G 0.077 voltage-dependent calcium channel alpha 1G subunit i... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.