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Name: SCN1A Sequence: fasta or formatted (1998aa) NCBI GI: 115583677
Description:

sodium channel, voltage-gated, type I, alpha

Referenced in:

Sodium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6        111           3
 C cysteine            1.8         36           2
 D aspartate           5.0        100           3
 E glutamate           6.8        136           2
 F phenylalanine       7.1        142           3
 G glycine             5.2        104           2
 H histidine           1.2         23           1
 I isoleucine          7.3        145           3
 K lysine              5.9        117           3
 L leucine            10.0        199           3
 M methionine          3.5         70           2
 N asparagine          5.3        105           2
 P proline             3.7         74           2
 Q glutamine           3.1         62           2
 R arginine            4.7         93           2
 S serine              7.4        148           5
 T threonine           5.4        108           3
 V valine              6.9        137           3
 W tryptophan          1.4         27           2
 Y tyrosine            3.1         61           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sodium channel, voltage-gated, type I, alpha 
SCN2A                 0.873   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.873   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.872   sodium channel, voltage-gated, type II, alpha isofor...
SCN3A                 0.841   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.817   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.816   sodium channel, voltage-gated, type III, alpha isof...
SCN9A                 0.758   sodium channel, voltage-gated, type IX, alpha 
SCN8A                 0.743   sodium channel, voltage gated, type VIII, alpha [Homo...
SCN5A                 0.601   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.597   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.597   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.596   voltage-gated sodium channel type V alpha isoform c...
SCN5A                 0.584   voltage-gated sodium channel type V alpha isoform d...
SCN5A                 0.578   voltage-gated sodium channel type V alpha isoform e...
SCN10A                0.523   sodium channel, voltage-gated, type X, alpha 
SCN4A                 0.459   voltage-gated sodium channel type 4 alpha 
SCN7A                 0.322   sodium channel, voltage-gated, type VII, alpha [Hom...
SCN11A                0.316   sodium channel, voltage-gated, type XI, alpha [Homo...
LOC100294386          0.247   PREDICTED: similar to sodium channel, voltage-gated...
CACNA1I               0.078   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.078   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1G               0.077   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.077   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.077   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.077   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.077   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.077   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.077   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.077   voltage-dependent calcium channel alpha 1G subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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