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Name: SCN11A Sequence: fasta or formatted (1791aa) NCBI GI: 115583667
Description:

sodium channel, voltage-gated, type XI, alpha

Referenced in:

Sodium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         93           2
 C cysteine            2.8         51           2
 D aspartate           4.3         77           2
 E glutamate           5.9        106           3
 F phenylalanine       7.3        131           3
 G glycine             4.7         85           2
 H histidine           1.6         28           2
 I isoleucine          8.5        152           4
 K lysine              6.7        120           3
 L leucine            10.6        190           3
 M methionine          3.0         54           2
 N asparagine          4.8         86           2
 P proline             4.2         75           2
 Q glutamine           4.0         71           3
 R arginine            4.2         76           2
 S serine              7.1        128           3
 T threonine           4.5         81           3
 V valine              6.4        114           3
 W tryptophan          1.8         32           2
 Y tyrosine            2.3         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sodium channel, voltage-gated, type XI, alpha [Homo... 
SCN4A                 0.440   voltage-gated sodium channel type 4 alpha 
SCN5A                 0.376   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.376   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.376   voltage-gated sodium channel type V alpha isoform c...
SCN5A                 0.375   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.365   voltage-gated sodium channel type V alpha isoform d...
SCN10A                0.364   sodium channel, voltage-gated, type X, alpha 
SCN5A                 0.359   voltage-gated sodium channel type V alpha isoform e...
SCN2A                 0.356   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.356   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.356   sodium channel, voltage-gated, type II, alpha isofor...
SCN9A                 0.356   sodium channel, voltage-gated, type IX, alpha 
SCN3A                 0.353   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.353   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.353   sodium channel, voltage-gated, type III, alpha isof...
SCN8A                 0.350   sodium channel, voltage gated, type VIII, alpha [Homo...
SCN1A                 0.349   sodium channel, voltage-gated, type I, alpha 
SCN7A                 0.317   sodium channel, voltage-gated, type VII, alpha [Hom...
LOC100294386          0.211   PREDICTED: similar to sodium channel, voltage-gated...
CACNA1I               0.092   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.092   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1H               0.091   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1G               0.091   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.091   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.091   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.091   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.091   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.091   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.091   voltage-dependent calcium channel alpha 1G subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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