SCN8A 35760

Name: SCN8A	Sequence: fasta or formatted (1980aa)		NCBI GI: 7657544
Description: sodium channel, voltage gated, type VIII, alpha		Referenced in: Sodium Channels
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 115 3 C cysteine 2.0 39 2 D aspartate 4.6 91 3 E glutamate 7.3 144 3 F phenylalanine 7.1 141 3 G glycine 6.0 119 3 H histidine 1.3 26 2 I isoleucine 7.9 156 3 K lysine 6.1 120 3 L leucine 9.6 191 3 M methionine 3.4 67 2 N asparagine 4.7 94 2 P proline 4.0 79 2 Q glutamine 2.7 54 2 R arginine 4.8 96 2 S serine 7.1 140 3 T threonine 4.6 92 3 V valine 6.5 129 3 W tryptophan 1.5 29 2 Y tyrosine 2.9 58 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sodium channel, voltage gated, type VIII, alpha [Homo... SCN2A 0.753 sodium channel, voltage-gated, type II, alpha isofor... SCN2A 0.752 sodium channel, voltage-gated, type II, alpha isofor... SCN2A 0.752 sodium channel, voltage-gated, type II, alpha isofor... SCN1A 0.746 sodium channel, voltage-gated, type I, alpha SCN3A 0.730 sodium channel, voltage-gated, type III, alpha isof... SCN3A 0.715 sodium channel, voltage-gated, type III, alpha isof... SCN3A 0.715 sodium channel, voltage-gated, type III, alpha isof... SCN9A 0.691 sodium channel, voltage-gated, type IX, alpha SCN5A 0.590 voltage-gated sodium channel type V alpha isoform f... SCN5A 0.586 voltage-gated sodium channel type V alpha isoform b ... SCN5A 0.586 voltage-gated sodium channel type V alpha isoform a ... SCN5A 0.585 voltage-gated sodium channel type V alpha isoform c... SCN5A 0.574 voltage-gated sodium channel type V alpha isoform d... SCN5A 0.568 voltage-gated sodium channel type V alpha isoform e... SCN10A 0.516 sodium channel, voltage-gated, type X, alpha SCN4A 0.451 voltage-gated sodium channel type 4 alpha SCN11A 0.318 sodium channel, voltage-gated, type XI, alpha [Homo... SCN7A 0.315 sodium channel, voltage-gated, type VII, alpha [Hom... LOC100294386 0.243 PREDICTED: similar to sodium channel, voltage-gated... CACNA1D 0.098 calcium channel, voltage-dependent, L type, alpha 1... CACNA1D 0.097 calcium channel, voltage-dependent, L type, alpha 1... CACNA1D 0.097 calcium channel, voltage-dependent, L type, alpha 1D ... CACNA1H 0.077 calcium channel, voltage-dependent, T type, alpha 1H... CACNA1C 0.077 calcium channel, voltage-dependent, L type, alpha 1... CACNA1C 0.077 calcium channel, voltage-dependent, L type, alpha 1... CACNA1C 0.077 calcium channel, voltage-dependent, L type, alpha 1... CACNA1H 0.076 calcium channel, voltage-dependent, T type, alpha 1H... CACNA1C 0.076 calcium channel, voltage-dependent, L type, alpha 1... CACNA1C 0.076 calcium channel, voltage-dependent, L type, alpha 1... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.