Guide to the Human Genome
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Name: LOC728836 Sequence: fasta or formatted (234aa) NCBI GI: 169172746
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         15           2
 C cysteine            3.4          8           2
 D aspartate           1.7          4           1
 E glutamate           0.9          2           1
 F phenylalanine       3.4          8           1
 G glycine             5.1         12           2
 H histidine           4.3         10           1
 I isoleucine          3.4          8           1
 K lysine              1.7          4           1
 L leucine            14.1         33           3
 M methionine          0.9          2           1
 N asparagine          2.6          6           1
 P proline            12.0         28           2
 Q glutamine           4.7         11           2
 R arginine            6.4         15           2
 S serine             14.1         33           2
 T threonine           9.4         22           3
 V valine              3.4          8           1
 W tryptophan          0.4          1           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132826          0.987   PREDICTED: hypothetical protein 
LOC100132632          0.949   PREDICTED: hypothetical protein 
LOC100292374          0.020   PREDICTED: similar to transmembrane protein 125 [Ho...
LOC100290008          0.020   PREDICTED: hypothetical protein XP_002346440 
LOC100288314          0.020   PREDICTED: hypothetical protein XP_002342147 
PHC3                  0.018   polyhomeotic like 3 
KCNC3                 0.018   Shaw-related voltage-gated potassium channel protein...
LOC100292845          0.018   PREDICTED: hypothetical protein 
LOC100289230          0.018   PREDICTED: hypothetical protein XP_002342600 
PUM2                  0.015   pumilio homolog 2 
PDE4A                 0.015   phosphodiesterase 4A isoform 3 
PDE4A                 0.015   phosphodiesterase 4A isoform 2 
PDE4A                 0.015   phosphodiesterase 4A isoform 1 
NHS                   0.015   Nance-Horan syndrome protein isoform 1 
NHS                   0.015   Nance-Horan syndrome protein isoform 2 
POM121L2              0.015   POM121 membrane glycoprotein-like 2 
LMTK3                 0.015   lemur tyrosine kinase 3 
TRIP10                0.015   thyroid hormone receptor interactor 10 
ULK2                  0.013   unc-51-like kinase 2 
ULK2                  0.013   unc-51-like kinase 2 
PODXL                 0.013   podocalyxin-like isoform 1 precursor 
PPRC1                 0.013   peroxisome proliferator-activated receptor gamma, co...
MEF2D                 0.013   myocyte enhancer factor 2D 
LOC100289589          0.013   PREDICTED: hypothetical protein XP_002342464 
KIAA1522              0.013   hypothetical protein LOC57648 
SEMA6B                0.013   semaphorin 6B precursor 
RCOR2                 0.013   REST corepressor 2 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
PRR21                 0.011   proline rich 21 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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