PODXL 34520

Name: PODXL	Sequence: fasta or formatted (558aa)		NCBI GI: 66277202
Description: podocalyxin-like isoform 1 precursor		Referenced in: Kidney Additional Host Defense Functions
Other entries for this name: alt prot [526aa] podocalyxin-like isoform 2 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.1 45 2 C cysteine 1.4 8 2 D aspartate 4.5 25 2 E glutamate 5.6 31 3 F phenylalanine 0.9 5 1 G glycine 5.0 28 3 H histidine 2.5 14 2 I isoleucine 2.9 16 2 K lysine 4.7 26 2 L leucine 9.3 52 5 M methionine 2.0 11 1 N asparagine 2.9 16 1 P proline 7.7 43 2 Q glutamine 5.0 28 2 R arginine 2.3 13 1 S serine 13.4 75 5 T threonine 14.9 83 3 V valine 5.6 31 3 W tryptophan 0.5 3 1 Y tyrosine 0.9 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 podocalyxin-like isoform 1 precursor PODXL 0.926 podocalyxin-like isoform 2 precursor MUC2 0.070 mucin 2 precursor LOC729792 0.064 PREDICTED: hypothetical protein LOC100294136 0.064 PREDICTED: hypothetical protein LOC100294091 0.064 PREDICTED: hypothetical protein LOC729792 0.063 PREDICTED: hypothetical protein LOC729792 0.063 PREDICTED: hypothetical protein LOC100294501 0.063 PREDICTED: hypothetical protein LOC100294238 0.063 PREDICTED: hypothetical protein LOC100294204 0.063 PREDICTED: hypothetical protein LOC730401 0.063 PREDICTED: hypothetical protein MUC5B 0.062 mucin 5, subtype B, tracheobronchial LOC100294420 0.062 PREDICTED: similar to mucin 2 LOC100294249 0.060 PREDICTED: hypothetical protein XP_002344067 MUC5AC 0.057 mucin 5AC MUC12 0.054 PREDICTED: mucin 12 LOC100130716 0.053 PREDICTED: similar to mucin 11 MUC12 0.052 PREDICTED: mucin 12, cell surface associated MUC6 0.051 mucin 6, gastric MUC17 0.051 mucin 17 LOC100133790 0.050 PREDICTED: intestinal mucin-like, partial LOC100294236 0.050 PREDICTED: similar to diffuse panbronchiolitis crit... MUC21 0.050 mucin 21 LOC732156 0.049 PREDICTED: similar to Mucin-3A MUC3A 0.048 PREDICTED: mucin 3A, cell surface associated, parti... LOC284297 0.046 hypothetical protein LOC284297 LOC100131514 0.046 PREDICTED: similar to hCG1747327, partial MUC16 0.044 mucin 16 MUC12 0.044 PREDICTED: mucin 12 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.