Guide to the Human Genome
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Name: LOC100292374 Sequence: fasta or formatted (145aa) NCBI GI: 239752795
Description:

PREDICTED: similar to transmembrane protein 125

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.2         22           3
 C cysteine            2.8          4           1
 D aspartate           2.1          3           1
 E glutamate           2.1          3           1
 F phenylalanine       1.4          2           1
 G glycine             4.8          7           2
 H histidine           2.1          3           2
 I isoleucine          0.7          1           1
 K lysine              1.4          2           1
 L leucine             3.4          5           2
 M methionine          3.4          5           1
 N asparagine          0.0          0           0
 P proline            11.7         17           3
 Q glutamine           2.8          4           1
 R arginine           11.0         16           2
 S serine             17.2         25           2
 T threonine          11.0         16           2
 V valine              4.1          6           2
 W tryptophan          2.8          4           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to transmembrane protein 125 [Ho... 
LOC100290008          1.000   PREDICTED: hypothetical protein XP_002346440 
LOC100288314          1.000   PREDICTED: hypothetical protein XP_002342147 
SRRM1                 0.044   serine/arginine repetitive matrix 1 
CXorf67               0.040   hypothetical protein LOC340602 
PRDM2                 0.037   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.037   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.037   retinoblastoma protein-binding zinc finger protein i...
LOC100132632          0.037   PREDICTED: hypothetical protein 
MUC17                 0.037   mucin 17 
BAT2D1                0.037   HBxAg transactivated protein 2 
LOC728836             0.033   PREDICTED: hypothetical protein 
SYNJ2                 0.029   synaptojanin 2 
COL27A1               0.029   collagen, type XXVII, alpha 1 
SELPLG                0.029   selectin P ligand 
LOC100287907          0.029   PREDICTED: hypothetical protein 
LOC100132826          0.029   PREDICTED: hypothetical protein 
LOC100287907          0.029   PREDICTED: hypothetical protein XP_002343168 
ZBTB4                 0.029   zinc finger and BTB domain containing 4 
ZBTB4                 0.029   zinc finger and BTB domain containing 4 
MDC1                  0.026   mediator of DNA-damage checkpoint 1 
MUC2                  0.026   mucin 2 precursor 
IRS2                  0.026   insulin receptor substrate 2 
MUC6                  0.026   mucin 6, gastric 
SRCAP                 0.026   Snf2-related CBP activator protein 
HIPK2                 0.026   homeodomain interacting protein kinase 2 isoform 2 ...
HIPK2                 0.026   homeodomain interacting protein kinase 2 isoform 1 ...
LOC100132635          0.026   PREDICTED: similar to mucin 5, partial 
SLC6A5                0.026   solute carrier family 6 (neurotransmitter transporte...
RIMBP3B               0.022   RIMS binding protein 3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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