Guide to the Human Genome
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Name: PDE4A Sequence: fasta or formatted (825aa) NCBI GI: 162329612
Description:

phosphodiesterase 4A isoform 3

Referenced in:

Cyclic Nucleotides

Other entries for this name:
alt prot [886aa] phosphodiesterase 4A isoform 1
alt prot [860aa] phosphodiesterase 4A isoform 2
alt prot [647aa] phosphodiesterase 4A isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         73           3
 C cysteine            1.3         11           1
 D aspartate           5.2         43           1
 E glutamate           8.7         72           7
 F phenylalanine       3.0         25           2
 G glycine             4.4         36           4
 H histidine           3.2         26           2
 I isoleucine          2.9         24           1
 K lysine              3.2         26           2
 L leucine            10.5         87           3
 M methionine          3.2         26           1
 N asparagine          3.3         27           2
 P proline             7.8         64           5
 Q glutamine           5.1         42           2
 R arginine            5.3         44           2
 S serine              9.7         80           2
 T threonine           6.1         50           2
 V valine              5.5         45           2
 W tryptophan          1.0          8           1
 Y tyrosine            1.9         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 4A isoform 3 
PDE4A                 0.942   phosphodiesterase 4A isoform 1 
PDE4A                 0.941   phosphodiesterase 4A isoform 2 
PDE4A                 0.755   phosphodiesterase 4A isoform 4 
PDE4B                 0.561   phosphodiesterase 4B isoform 1 
PDE4B                 0.561   phosphodiesterase 4B isoform 3 
PDE4B                 0.561   phosphodiesterase 4B isoform 1 
PDE4D                 0.557   phosphodiesterase 4D isoform 2 
PDE4D                 0.555   phosphodiesterase 4D isoform 1 
PDE4C                 0.509   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.507   phosphodiesterase 4C isoform PDE4C-1 
PDE4C                 0.497   phosphodiesterase 4C isoform PDE4C-2 
PDE4B                 0.476   phosphodiesterase 4B isoform 2 
PDE1A                 0.130   phosphodiesterase 1A isoform 2 
PDE1A                 0.130   phosphodiesterase 1A isoform 1 
PDE1C                 0.128   phosphodiesterase 1C 
PDE1B                 0.127   phosphodiesterase 1B 
PDE7B                 0.117   phosphodiesterase 7B 
PDE8A                 0.116   phosphodiesterase 8A isoform 2 
PDE8A                 0.116   phosphodiesterase 8A isoform 1 
PDE8B                 0.114   phosphodiesterase 8B isoform 2 
PDE8B                 0.114   phosphodiesterase 8B isoform 4 
PDE8B                 0.114   phosphodiesterase 8B isoform 5 
PDE8B                 0.114   phosphodiesterase 8B isoform 3 
PDE8B                 0.114   phosphodiesterase 8B isoform 1 
PDE7A                 0.113   phosphodiesterase 7A isoform a 
PDE7A                 0.104   phosphodiesterase 7A isoform b 
PDE3B                 0.094   phosphodiesterase 3B 
PDE9A                 0.093   phosphodiesterase 9A isoform g 
PDE9A                 0.093   phosphodiesterase 9A isoform g 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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