Guide to the Human Genome
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Name: LOC100128994 Sequence: fasta or formatted (226aa) NCBI GI: 169171680
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {179aa} PREDICTED: hypothetical protein
alt prot {179aa} PREDICTED: hypothetical protein
alt prot {179aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         24           2
 C cysteine            2.2          5           1
 D aspartate           2.2          5           1
 E glutamate           1.3          3           1
 F phenylalanine       3.1          7           1
 G glycine             8.0         18           1
 H histidine           4.4         10           1
 I isoleucine          2.7          6           1
 K lysine              4.4         10           1
 L leucine             9.3         21           2
 M methionine          0.4          1           1
 N asparagine          2.2          5           1
 P proline            11.9         27           4
 Q glutamine           2.2          5           1
 R arginine           10.2         23           2
 S serine             10.6         24           2
 T threonine           8.0         18           2
 V valine              3.5          8           1
 W tryptophan          0.9          2           1
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128994          0.595   PREDICTED: hypothetical protein 
LOC100128994          0.595   PREDICTED: hypothetical protein 
LOC100128994          0.595   PREDICTED: hypothetical protein 
FMN1                  0.027   formin 1 
FIP1L1                0.027   FIP1 like 1 isoform 3 
MICAL3                0.025   microtubule associated monoxygenase, calponin and L...
MLL4                  0.025   myeloid/lymphoid or mixed-lineage leukemia 4 
GLTSCR1               0.025   glioma tumor suppressor candidate region gene 1 [Ho...
LOC284297             0.023   hypothetical protein LOC284297 
FMNL2                 0.023   formin-like 2 
PPP1R13L              0.023   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.023   protein phosphatase 1, regulatory subunit 13 like [H...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Hom...
LOC100129566          0.023   PREDICTED: hypothetical protein LOC100129566 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
LOC100129566          0.023   PREDICTED: hypothetical protein LOC100129566 
LOC100129566          0.023   PREDICTED: hypothetical protein LOC100129566 
MICAL2                0.023   microtubule associated monoxygenase, calponin and LIM...
MYO16                 0.023   myosin heavy chain Myr 8 
LOC100292058          0.023   PREDICTED: hypothetical protein XP_002344766 
LOC100293557          0.023   PREDICTED: hypothetical protein 
LOC100290367          0.023   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.023   PREDICTED: hypothetical protein XP_002343287 
FIGNL2                0.023   fidgetin-like 2 
PTPN23                0.023   protein tyrosine phosphatase, non-receptor type 23 [...
MYO18B                0.023   myosin XVIIIB 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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