Guide to the Human Genome
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Name: LOC100128994 Sequence: fasta or formatted (179aa) NCBI GI: 239508946
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {179aa} PREDICTED: hypothetical protein
alt prot {226aa} PREDICTED: hypothetical protein
alt mRNA {179aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         20           2
 C cysteine            2.2          4           1
 D aspartate           2.2          4           1
 E glutamate           1.1          2           1
 F phenylalanine       2.8          5           1
 G glycine             8.4         15           1
 H histidine           3.9          7           1
 I isoleucine          2.2          4           1
 K lysine              3.9          7           1
 L leucine             9.5         17           2
 M methionine          0.6          1           1
 N asparagine          2.8          5           1
 P proline             8.4         15           2
 Q glutamine           1.1          2           1
 R arginine           11.7         21           2
 S serine             12.8         23           2
 T threonine           7.8         14           2
 V valine              3.9          7           1
 W tryptophan          1.1          2           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128994          1.000   PREDICTED: hypothetical protein 
LOC100128994          1.000   PREDICTED: hypothetical protein 
LOC100128994          0.933   PREDICTED: hypothetical protein 
LOC100290265          0.015   PREDICTED: hypothetical protein XP_002346787 
LOC100294420          0.015   PREDICTED: similar to mucin 2 
WNK1                  0.012   WNK lysine deficient protein kinase 1 
LOC100133063          0.012   PREDICTED: similar to breast cancer anti-estrogen r...
SETDB1                0.012   SET domain, bifurcated 1 isoform 2 
SETDB1                0.012   SET domain, bifurcated 1 isoform 1 
PPP2R3B               0.012   protein phosphatase 2, regulatory subunit B'', beta ...
FRMD4A                0.012   FERM domain containing 4A 
LOC728052             0.009   PREDICTED: hypothetical protein 
PCDHGC5               0.009   protocadherin gamma subfamily C, 5 isoform 2 precurs...
PCDHGC5               0.009   protocadherin gamma subfamily C, 5 isoform 1 precurs...
ZNF48                 0.009   zinc finger protein 48 
KLKBL4                0.009   plasma kallikrein-like protein 4 
RICH2                 0.009   Rho GTPase-activating protein RICH2 
NES                   0.009   nestin 
ZFP36                 0.009   zinc finger protein 36, C3H type, homolog 
USP36                 0.009   ubiquitin specific peptidase 36 
USP54                 0.009   ubiquitin specific peptidase 54 
SAMD1                 0.009   sterile alpha motif domain containing 1 
LOC100293606          0.006   PREDICTED: hypothetical protein 
LOC100287332          0.006   PREDICTED: hypothetical protein 
LOC100287332          0.006   PREDICTED: hypothetical protein XP_002342882 
SPATC1                0.006   spermatogenesis and centriole associated 1 isoform ...
SPATC1                0.006   spermatogenesis and centriole associated 1 isoform ...
SS18L1                0.006   SS18-like protein 1 
USH1C                 0.006   harmonin isoform b3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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