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Search of human proteins with 169171558
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
(303 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens] 639 0.0
gi|169171977 PREDICTED: hypothetical protein [Homo sapiens] 281 4e-76
gi|169171016 PREDICTED: hypothetical protein [Homo sapiens] 281 4e-76
gi|239509059 PREDICTED: hypothetical protein [Homo sapiens] 281 4e-76
gi|22748835 transmembrane protein 178 [Homo sapiens] 130 1e-30
gi|153281202 neuropeptide W preproprotein [Homo sapiens] 37 0.017
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 37 0.028
gi|93588657 claudin domain containing 1 protein isoform d [Homo ... 36 0.037
gi|93588650 claudin domain containing 1 protein isoform a [Homo ... 36 0.037
gi|93588620 claudin domain containing 1 protein isoform b [Homo ... 36 0.037
gi|93588614 claudin domain containing 1 protein isoform a [Homo ... 36 0.037
gi|93588624 claudin domain containing 1 protein isoform a [Homo ... 36 0.037
gi|11096340 claudin domain containing 1 protein isoform a [Homo ... 36 0.037
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 35 0.11
gi|239747543 PREDICTED: hypothetical protein XP_002347646 [Homo ... 34 0.14
gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens] 33 0.24
gi|195963433 syncytin precursor [Homo sapiens] 33 0.41
gi|48949851 syncytin precursor [Homo sapiens] 33 0.41
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 32 0.53
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 32 0.53
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens] 32 0.53
gi|226437592 transmembrane protein 114 [Homo sapiens] 32 0.53
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 32 0.69
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 32 0.69
gi|4758010 clock [Homo sapiens] 32 0.91
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 31 1.5
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 31 1.5
gi|145553959 elaC homolog 2 [Homo sapiens] 30 2.6
gi|18079216 CASK interacting protein 1 [Homo sapiens] 30 3.4
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 30 3.4
>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 639 bits (1647), Expect = 0.0
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC
Sbjct: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
Query: 61 WGHESSSIDVLLSLAPVITIATRQNLCSLASAEPGEQYRPSNEQSQVTAGPPARPLASQA 120
WGHESSSIDVLLSLAPVITIATRQNLCSLASAEPGEQYRPSNEQSQVTAGPPARPLASQA
Sbjct: 61 WGHESSSIDVLLSLAPVITIATRQNLCSLASAEPGEQYRPSNEQSQVTAGPPARPLASQA 120
Query: 121 PIVIKRWFQQFHLTHMAPPHQKEGSAAVPLLCPVSPHSPANFLPGRGLSVSDGQYLRRMT 180
PIVIKRWFQQFHLTHMAPPHQKEGSAAVPLLCPVSPHSPANFLPGRGLSVSDGQYLRRMT
Sbjct: 121 PIVIKRWFQQFHLTHMAPPHQKEGSAAVPLLCPVSPHSPANFLPGRGLSVSDGQYLRRMT 180
Query: 181 AGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELS 240
AGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELS
Sbjct: 181 AGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELS 240
Query: 241 RYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENG 300
RYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENG
Sbjct: 241 RYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENG 300
Query: 301 TVC 303
TVC
Sbjct: 301 TVC 303
>gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 281 bits (720), Expect = 4e-76
Identities = 135/165 (81%), Positives = 139/165 (84%), Gaps = 9/165 (5%)
Query: 139 PHQKEGSAAVPLLCPVSPHSPANFLPGRGLSVSDGQYLRRMTAGFMGMAVAIILFGWIIG 198
P + GSA + L C + G + LRRMTAGFMGMAVAIILFGWIIG
Sbjct: 40 PSEDHGSAGLQLQCSTT---------GTSCWGHESSDLRRMTAGFMGMAVAIILFGWIIG 90
Query: 199 VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG 258
VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG
Sbjct: 91 VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG 150
Query: 259 WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC 303
WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC
Sbjct: 151 WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC 195
Score = 145 bits (367), Expect = 3e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Query: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC
Sbjct: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
Query: 61 WGHESSSI 68
WGHESS +
Sbjct: 61 WGHESSDL 68
>gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 281 bits (720), Expect = 4e-76
Identities = 135/165 (81%), Positives = 139/165 (84%), Gaps = 9/165 (5%)
Query: 139 PHQKEGSAAVPLLCPVSPHSPANFLPGRGLSVSDGQYLRRMTAGFMGMAVAIILFGWIIG 198
P + GSA + L C + G + LRRMTAGFMGMAVAIILFGWIIG
Sbjct: 40 PSEDHGSAGLQLQCSTT---------GTSCWGHESSDLRRMTAGFMGMAVAIILFGWIIG 90
Query: 199 VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG 258
VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG
Sbjct: 91 VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG 150
Query: 259 WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC 303
WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC
Sbjct: 151 WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC 195
Score = 145 bits (367), Expect = 3e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Query: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC
Sbjct: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
Query: 61 WGHESSSI 68
WGHESS +
Sbjct: 61 WGHESSDL 68
>gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 281 bits (720), Expect = 4e-76
Identities = 135/165 (81%), Positives = 139/165 (84%), Gaps = 9/165 (5%)
Query: 139 PHQKEGSAAVPLLCPVSPHSPANFLPGRGLSVSDGQYLRRMTAGFMGMAVAIILFGWIIG 198
P + GSA + L C + G + LRRMTAGFMGMAVAIILFGWIIG
Sbjct: 40 PSEDHGSAGLQLQCSTT---------GTSCWGHESSDLRRMTAGFMGMAVAIILFGWIIG 90
Query: 199 VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG 258
VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG
Sbjct: 91 VLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYG 150
Query: 259 WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC 303
WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC
Sbjct: 151 WSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNYPKSRPENGTVC 195
Score = 145 bits (367), Expect = 3e-35
Identities = 66/68 (97%), Positives = 67/68 (98%)
Query: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC
Sbjct: 1 MNVRLSGQLTPSCFVTQAACSYHAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSC 60
Query: 61 WGHESSSI 68
WGHESS +
Sbjct: 61 WGHESSDL 68
>gi|22748835 transmembrane protein 178 [Homo sapiens]
Length = 297
Score = 130 bits (327), Expect = 1e-30
Identities = 57/110 (51%), Positives = 77/110 (70%)
Query: 175 YLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAG 234
+LRR+TAGF+GMAVA++L G I+ + W+ L Q+VAGLLFLM G FC ISLCT A
Sbjct: 172 HLRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAAS 231
Query: 235 INFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSV 284
I+++L+R P+ +Y LP D+ HGY WS+FCAW LG + +G C P +
Sbjct: 232 ISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFI 281
>gi|153281202 neuropeptide W preproprotein [Homo sapiens]
Length = 165
Score = 37.4 bits (85), Expect = 0.017
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 106 QVTAGPPAR------PLASQAPIVIKRWFQQFHLTHMAPPHQKEGSAAVPLLCPVSPHSP 159
+ AGP AR P A +AP+++ W Q+ T ++ A +P+ P SP +P
Sbjct: 67 RAAAGPLARDTLSPEPAAREAPLLLPSWVQELWET-----RRRSSQAGIPVRAPRSPRAP 121
Query: 160 ANFLPGRGLSVSD-GQYLRR 178
L L S GQ LRR
Sbjct: 122 EPALEPESLDFSGAGQRLRR 141
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 36.6 bits (83), Expect = 0.028
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 23 HAEGRISSRPPQEVPMWPSEDHGSAGLQLQCSTTGTSCWGHESSSIDVLLSLAPVITIAT 82
+A G + P +VP PS+ GL C++ G S +S+ + P I+ A+
Sbjct: 32 NAPGLPADVPGSDVPQGPSDSQILQGL---CASEGPSTSVLPTSAEGPSTFVPPTISEAS 88
Query: 83 RQNLCSLASAEPGEQYRPSNEQSQVTAGPP--ARPLASQAPIVIKRWFQQFHLTHMAPPH 140
+ S PG P+ + T+GPP ++ L + + + T P
Sbjct: 89 SASGQPTISEGPGTSVLPTPSEGLSTSGPPTISKGLCTSVTLAA----SEGRNTSRPPTS 144
Query: 141 QKEGSAAVPLLCPVSPHSPANFLPGRGLSVS 171
+E S +VP P + PG G S S
Sbjct: 145 SEEPSTSVPPTASEVPSTSLPPTPGEGTSTS 175
>gi|93588657 claudin domain containing 1 protein isoform d [Homo
sapiens]
Length = 158
Score = 36.2 bits (82), Expect = 0.037
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 245
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 51 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 108
Query: 246 LYGLPDDISHGYGWSMFC 263
LPD++S +GWS FC
Sbjct: 109 ---LPDNVSGEFGWS-FC 122
>gi|93588650 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 36.2 bits (82), Expect = 0.037
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 245
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
Query: 246 LYGLPDDISHGYGWSMFC 263
LPD++S +GWS FC
Sbjct: 204 ---LPDNVSGEFGWS-FC 217
>gi|93588620 claudin domain containing 1 protein isoform b [Homo
sapiens]
Length = 276
Score = 36.2 bits (82), Expect = 0.037
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 245
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 169 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 226
Query: 246 LYGLPDDISHGYGWSMFC 263
LPD++S +GWS FC
Sbjct: 227 ---LPDNVSGEFGWS-FC 240
>gi|93588614 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 36.2 bits (82), Expect = 0.037
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 245
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
Query: 246 LYGLPDDISHGYGWSMFC 263
LPD++S +GWS FC
Sbjct: 204 ---LPDNVSGEFGWS-FC 217
>gi|93588624 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 36.2 bits (82), Expect = 0.037
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 245
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
Query: 246 LYGLPDDISHGYGWSMFC 263
LPD++S +GWS FC
Sbjct: 204 ---LPDNVSGEFGWS-FC 217
>gi|11096340 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 36.2 bits (82), Expect = 0.037
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 245
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 146 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 203
Query: 246 LYGLPDDISHGYGWSMFC 263
LPD++S +GWS FC
Sbjct: 204 ---LPDNVSGEFGWS-FC 217
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 34.7 bits (78), Expect = 0.11
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 40 PSEDHGSAGLQLQCSTTGTSCWGHESSSIDVL--------LSLAPVITIATRQNLCSLAS 91
PSED ++L+ +T S + +S +V + L +T+ ++ C L +
Sbjct: 675 PSEDRNPFPVKLR--STSLSLKYRDGASQEVKGVKRYSAEVRLERSLTVLPKEEKCPLGT 732
Query: 92 AEPGEQYRPSNEQSQVTAGPPARPLASQAPIVIKRWFQQFHLTHM-APPHQKEG 144
A R ++Q + A PP PL+S+ P+ K Q F L H APP G
Sbjct: 733 APALRGTRAPSDQGKGKARPP-EPLSSKPPLPRKPLLQSFTLPHQPAPPDAGPG 785
>gi|239747543 PREDICTED: hypothetical protein XP_002347646 [Homo
sapiens]
Length = 80
Score = 34.3 bits (77), Expect = 0.14
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 95 GEQYRPSNEQSQVTAGPPARPLASQAPIV 123
G Q RP + S AGP A+PL +Q+P+V
Sbjct: 42 GRQLRPGEKLSTAAAGPGAKPLTAQSPVV 70
>gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens]
Length = 1580
Score = 33.5 bits (75), Expect = 0.24
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 67 SIDVLLSLAPVITIATRQN--------LCSLASAEPGEQYRPSNEQSQVTAGPPARPLAS 118
++ V S P+ T A+R++ L SL S P +QYR + + T GPP PL +
Sbjct: 888 NVSVADSYDPISTDASRRSSEASQSDGLPSLLSLTPAQQYRLKAKYAAATGGPPPTPLPN 947
Query: 119 QAPIVIK 125
+ +K
Sbjct: 948 MERMSLK 954
>gi|195963433 syncytin precursor [Homo sapiens]
Length = 538
Score = 32.7 bits (73), Expect = 0.41
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 32 PPQEVPMWPSEDHGSAGLQLQCSTTGTSCWGHESSSIDVLLSLAPVITIATRQNLCSLAS 91
PP ++ PS G+ C T+ C S S+ L L P +TI T Q+L S
Sbjct: 257 PPTQIVCLPS------GIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIYTEQDLYSYVI 310
Query: 92 AEPGEQYRP 100
++P + P
Sbjct: 311 SKPRNKRVP 319
>gi|48949851 syncytin precursor [Homo sapiens]
Length = 538
Score = 32.7 bits (73), Expect = 0.41
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 32 PPQEVPMWPSEDHGSAGLQLQCSTTGTSCWGHESSSIDVLLSLAPVITIATRQNLCSLAS 91
PP ++ PS G+ C T+ C S S+ L L P +TI T Q+L S
Sbjct: 257 PPTQIVCLPS------GIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIYTEQDLYSYVI 310
Query: 92 AEPGEQYRP 100
++P + P
Sbjct: 311 SKPRNKRVP 319
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 32.3 bits (72), Expect = 0.53
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 243
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 112 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 171
Query: 244 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 275
L D + +GWS+ W L++G
Sbjct: 172 LEEKALLDQVDISFGWSLALGWISFIAELLTG 203
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 32.3 bits (72), Expect = 0.53
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 243
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 106 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 165
Query: 244 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 275
L D + +GWS+ W L++G
Sbjct: 166 LEEKALLDQVDISFGWSLALGWISFIAELLTG 197
>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 122
Score = 32.3 bits (72), Expect = 0.53
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 243
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 11 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 70
Query: 244 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 275
L D + +GWS+ W L++G
Sbjct: 71 LEEKALLDQVDISFGWSLALGWISFIAELLTG 102
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 32.3 bits (72), Expect = 0.53
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 243
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 112 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 171
Query: 244 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 275
L D + +GWS+ W L++G
Sbjct: 172 LEEKALLDQVDISFGWSLALGWISFIAELLTG 203
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 32.0 bits (71), Expect = 0.69
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 33 PQEVPMWPSEDHGSAGLQLQCSTTGTSCWGHESSSIDVLLSLAPVITIATRQNLCSLASA 92
P+ + PS + + C T S ++ S P IT TR N S +A
Sbjct: 1391 PKRLIQLPSATQSNVLSSVSCMPTMPPIPARSQSQENMRSSPNPFITGLTRTNPFSDRTA 1450
Query: 93 EPGEQYRPSNEQSQVTA 109
PG +R +E+S+ T+
Sbjct: 1451 APGNPFRAKSEESEATS 1467
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 32.0 bits (71), Expect = 0.69
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 33 PQEVPMWPSEDHGSAGLQLQCSTTGTSCWGHESSSIDVLLSLAPVITIATRQNLCSLASA 92
P+ + PS + + C T S ++ S P IT TR N S +A
Sbjct: 1305 PKRLIQLPSATQSNVLSSVSCMPTMPPIPARSQSQENMRSSPNPFITGLTRTNPFSDRTA 1364
Query: 93 EPGEQYRPSNEQSQVTA 109
PG +R +E+S+ T+
Sbjct: 1365 APGNPFRAKSEESEATS 1381
>gi|4758010 clock [Homo sapiens]
Length = 846
Score = 31.6 bits (70), Expect = 0.91
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 79 TIATRQNLCSLASAEPGEQYRPSNEQSQVTAGPPARPLASQAPIVIKRWFQQFHLTHMAP 138
T AT+Q S +Q + S EQ + P++ +Q P +++ Q L H P
Sbjct: 740 TFATQQQQSQTLSVTQQQQQQSSQEQQLTSVQQPSQAQLTQPP---QQFLQTSRLLHGNP 796
Query: 139 PHQKEGSAAVPLLCPVSPHS 158
Q SAA PL P S
Sbjct: 797 STQLILSAAFPLQQSTFPQS 816
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 209 MQYVAGLLFLMGGTFCI--ISLCTCVAGINFELSRYPRY--LYGLPDDISHGY--GWSMF 262
M +G++F++ G I +S+ + NF +S Y + G+ + Y G ++F
Sbjct: 117 MTLTSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALF 176
Query: 263 CAWGGLGLTLISGFFCTLAPSVQPVPRTNY 292
W GLTLI G +A TNY
Sbjct: 177 VGWVAGGLTLIGGVMMCIACRGLAPEETNY 206
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 209 MQYVAGLLFLMGGTFCI--ISLCTCVAGINFELSRYPRY--LYGLPDDISHGY--GWSMF 262
M +G++F++ G I +S+ + NF +S Y + G+ + Y G ++F
Sbjct: 117 MTLTSGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALF 176
Query: 263 CAWGGLGLTLISGFFCTLAPSVQPVPRTNY 292
W GLTLI G +A TNY
Sbjct: 177 VGWVAGGLTLIGGVMMCIACRGLAPEETNY 206
>gi|145553959 elaC homolog 2 [Homo sapiens]
Length = 826
Score = 30.0 bits (66), Expect = 2.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 103 EQSQVTAGPPARPLASQAPIVIKRWFQQFH 132
E++ + G P PL AP +K W QQ+H
Sbjct: 563 ERALASLGKPLHPLLVVAPNQLKAWLQQYH 592
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 29.6 bits (65), Expect = 3.4
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 99 RPSNEQSQVTAGPPARPLASQAPIVIKRWFQQFHLTHMAPPHQKEGSAAVPLLCPVSP 156
RP++EQ+ PP P A P L H+ P EG A P PVSP
Sbjct: 1180 RPASEQAGPPELPPPPPPAEPPPT---------DLAHLPPLPPPEGEARKPAKPPVSP 1228
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 29.6 bits (65), Expect = 3.4
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 65 SSSIDVLLSLAPV--ITIATRQNLCSLASAEPGEQYRPSNEQSQVTAGPPARPLASQA 120
S +++ L SL P+ + QNL +LA+A Q PS + T+ P L S A
Sbjct: 237 SGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSA 294
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,510,779
Number of Sequences: 37866
Number of extensions: 649895
Number of successful extensions: 1850
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1818
Number of HSP's gapped (non-prelim): 60
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.