Guide to the Human Genome
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Name: CLDND1 Sequence: fasta or formatted (253aa) NCBI GI: 11096340
Description:

claudin domain containing 1 protein isoform a

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt mRNA [253aa] claudin domain containing 1 protein isoform a
alt prot [276aa] claudin domain containing 1 protein isoform b
alt mRNA [253aa] claudin domain containing 1 protein isoform a
alt mRNA [253aa] claudin domain containing 1 protein isoform a
alt prot [158aa] claudin domain containing 1 protein isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         20           2
 C cysteine            4.7         12           1
 D aspartate           4.3         11           1
 E glutamate           5.1         13           1
 F phenylalanine       6.3         16           1
 G glycine             5.5         14           1
 H histidine           2.0          5           1
 I isoleucine          5.9         15           1
 K lysine              3.2          8           1
 L leucine            11.5         29           2
 M methionine          2.8          7           1
 N asparagine          4.0         10           1
 P proline             3.6          9           2
 Q glutamine           2.0          5           1
 R arginine            4.3         11           2
 S serine              7.9         20           2
 T threonine           6.3         16           1
 V valine              5.5         14           2
 W tryptophan          2.8          7           1
 Y tyrosine            4.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   claudin domain containing 1 protein isoform a 
CLDND1                1.000   claudin domain containing 1 protein isoform a 
CLDND1                1.000   claudin domain containing 1 protein isoform b 
CLDND1                1.000   claudin domain containing 1 protein isoform a 
CLDND1                1.000   claudin domain containing 1 protein isoform a 
CLDND1                0.597   claudin domain containing 1 protein isoform d 
TMEM114               0.063   PREDICTED: transmembrane protein 114 
TMEM114               0.063   transmembrane protein 114 
TMEM114               0.062   PREDICTED: transmembrane protein 114, partial [Homo...
TMEM114               0.052   PREDICTED: transmembrane protein 114 
CLDN3                 0.028   claudin 3 
LOC100131199          0.022   PREDICTED: hypothetical protein 
LOC100131199          0.022   PREDICTED: hypothetical protein 
LOC100131199          0.022   PREDICTED: hypothetical protein 
LOC100131199          0.022   PREDICTED: hypothetical protein 
OR11H6                0.022   olfactory receptor, family 11, subfamily H, member 6...
CACNG5                0.022   voltage-dependent calcium channel gamma-5 subunit is...
PMP22                 0.020   peripheral myelin protein 22 
PMP22                 0.020   peripheral myelin protein 22 
PMP22                 0.020   peripheral myelin protein 22 
CLDN19                0.018   claudin 19 isoform a 
CLDN19                0.018   claudin 19 isoform b 
EMP2                  0.016   epithelial membrane protein 2 
CACNG5                0.014   voltage-dependent calcium channel gamma-5 subunit iso...
CLDN2                 0.012   claudin 2 
OR11H1                0.012   olfactory receptor, family 11, subfamily H, member 1...
CACNG1                0.012   voltage-dependent calcium channel gamma-1 subunit [Ho...
OR11H12               0.010   olfactory receptor, family 11, subfamily H, member 1...
CLDN15                0.010   claudin 15 
ERMN                  0.008   ermin, ERM-like protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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