Guide to the Human Genome
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Name: ERVWE1 Sequence: fasta or formatted (538aa) NCBI GI: 195963433
Description:

syncytin precursor

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Other entries for this name:
alt mRNA [538aa] syncytin precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         24           2
 C cysteine            3.3         18           2
 D aspartate           2.4         13           1
 E glutamate           4.3         23           2
 F phenylalanine       3.9         21           2
 G glycine             6.5         35           3
 H histidine           2.2         12           1
 I isoleucine          5.2         28           2
 K lysine              3.2         17           1
 L leucine            11.2         60           4
 M methionine          2.4         13           1
 N asparagine          4.8         26           2
 P proline             7.4         40           3
 Q glutamine           4.1         22           1
 R arginine            5.4         29           2
 S serine              8.6         46           3
 T threonine           9.3         50           2
 V valine              6.3         34           2
 W tryptophan          1.7          9           1
 Y tyrosine            3.3         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   syncytin precursor 
ERVWE1                1.000   syncytin precursor 
HERV-FRD              0.149   syncytin 2 
LOC100293101          0.029   PREDICTED: similar to Uncharacterized protein LP905...
LOC100290734          0.029   PREDICTED: hypothetical protein XP_002346661 
LOC100288413          0.029   PREDICTED: hypothetical protein XP_002342492 
ERV3                  0.021   endogenous retroviral sequence 3 
MUC5AC                0.008   mucin 5AC 
LOC100131199          0.007   PREDICTED: hypothetical protein 
MUC6                  0.007   mucin 6, gastric 
DICER1                0.006   dicer1 
DICER1                0.006   dicer1 
HPSE2                 0.006   heparanase 2 
WNK2                  0.005   WNK lysine deficient protein kinase 2 
TTN                   0.005   titin isoform N2-A 
MMD2                  0.005   monocyte to macrophage differentiation-associated 2...
LRRC37B               0.005   leucine rich repeat containing 37B 
MAD1L1                0.005   MAD1-like 1 protein 
MAD1L1                0.005   MAD1-like 1 protein 
MAD1L1                0.005   MAD1-like 1 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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