Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131199 Sequence: fasta or formatted (303aa) NCBI GI: 169171558
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {195aa} PREDICTED: hypothetical protein
alt prot {195aa} PREDICTED: hypothetical protein
alt prot {195aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         23           2
 C cysteine            4.6         14           2
 D aspartate           2.0          6           2
 E glutamate           3.3         10           1
 F phenylalanine       4.0         12           2
 G glycine             9.9         30           2
 H histidine           2.6          8           1
 I isoleucine          5.0         15           2
 K lysine              1.0          3           1
 L leucine             9.9         30           2
 M methionine          3.0          9           1
 N asparagine          2.3          7           1
 P proline             8.6         26           2
 Q glutamine           5.3         16           2
 R arginine            5.0         15           2
 S serine              9.9         30           3
 T threonine           5.3         16           2
 V valine              5.6         17           1
 W tryptophan          2.3          7           1
 Y tyrosine            3.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131199          0.417   PREDICTED: hypothetical protein 
LOC100131199          0.417   PREDICTED: hypothetical protein 
LOC100131199          0.417   PREDICTED: hypothetical protein 
TMEM178               0.171   transmembrane protein 178 
NPW                   0.020   neuropeptide W preproprotein 
MAGEE1                0.020   melanoma antigen family E, 1 
CLDND1                0.018   claudin domain containing 1 protein isoform d 
CLDND1                0.018   claudin domain containing 1 protein isoform a 
CLDND1                0.018   claudin domain containing 1 protein isoform b 
CLDND1                0.018   claudin domain containing 1 protein isoform a 
CLDND1                0.018   claudin domain containing 1 protein isoform a 
CLDND1                0.018   claudin domain containing 1 protein isoform a 
C2orf55               0.016   hypothetical protein LOC343990 
LOC100289753          0.015   PREDICTED: hypothetical protein XP_002347646 
GLI3                  0.013   GLI-Kruppel family member GLI3 
ERVWE1                0.013   syncytin precursor 
ERVWE1                0.013   syncytin precursor 
TMEM114               0.011   PREDICTED: transmembrane protein 114 
TMEM114               0.011   PREDICTED: transmembrane protein 114, partial [Homo...
TMEM114               0.011   PREDICTED: transmembrane protein 114 
TMEM114               0.011   transmembrane protein 114 
SYNJ1                 0.011   synaptojanin 1 isoform a 
SYNJ1                 0.011   synaptojanin 1 isoform d 
CLOCK                 0.011   clock 
CLDN18                0.010   claudin 18 isoform 2 
CLDN18                0.010   claudin 18 isoform 1 
ELAC2                 0.008   elaC homolog 2 
CASKIN1               0.008   CASK interacting protein 1 
CUGBP1                0.008   CUG triplet repeat, RNA-binding protein 1 isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press