Guide to the Human Genome
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Name: LOC100131199 Sequence: fasta or formatted (195aa) NCBI GI: 239509059
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {195aa} PREDICTED: hypothetical protein
alt prot {303aa} PREDICTED: hypothetical protein
alt mRNA {195aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         11           2
 C cysteine            6.2         12           2
 D aspartate           2.6          5           2
 E glutamate           3.1          6           1
 F phenylalanine       4.6          9           2
 G glycine            12.3         24           2
 H histidine           2.1          4           1
 I isoleucine          5.1         10           2
 K lysine              0.5          1           1
 L leucine             9.7         19           2
 M methionine          4.1          8           1
 N asparagine          2.1          4           1
 P proline             6.2         12           2
 Q glutamine           3.6          7           1
 R arginine            5.1         10           2
 S serine              9.2         18           2
 T threonine           6.2         12           2
 V valine              5.1         10           1
 W tryptophan          3.1          6           1
 Y tyrosine            3.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131199          1.000   PREDICTED: hypothetical protein 
LOC100131199          1.000   PREDICTED: hypothetical protein 
LOC100131199          0.646   PREDICTED: hypothetical protein 
TMEM178               0.263   transmembrane protein 178 
CLDND1                0.028   claudin domain containing 1 protein isoform d 
CLDND1                0.028   claudin domain containing 1 protein isoform a 
CLDND1                0.028   claudin domain containing 1 protein isoform b 
CLDND1                0.028   claudin domain containing 1 protein isoform a 
CLDND1                0.028   claudin domain containing 1 protein isoform a 
CLDND1                0.028   claudin domain containing 1 protein isoform a 
TMEM114               0.018   PREDICTED: transmembrane protein 114 
TMEM114               0.018   PREDICTED: transmembrane protein 114, partial [Homo...
TMEM114               0.018   PREDICTED: transmembrane protein 114 
TMEM114               0.018   transmembrane protein 114 
TMEM47                0.015   transmembrane protein 47 
CLDN18                0.015   claudin 18 isoform 2 
CLDN18                0.015   claudin 18 isoform 1 
CLDND2                0.015   claudin domain containing 2 
LHFPL2                0.013   lipoma HMGIC fusion partner-like 2 
OPN3                  0.008   opsin 3 
LIM2                  0.008   lens intrinsic membrane protein 2, 19kDa isoform 2 ...
LIM2                  0.008   lens intrinsic membrane protein 2, 19kDa isoform 1 [...
ADAM9                 0.005   ADAM metallopeptidase domain 9 isoform 1 precursor [H...
SLC7A9                0.005   solute carrier family 7, member 9 
SLC7A9                0.005   solute carrier family 7, member 9 
PLCE1                 0.005   phospholipase C, epsilon 1 
FRAS1                 0.005   Fraser syndrome 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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