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Search of human proteins with 169169800
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169169800 PREDICTED: hypothetical protein [Homo sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169169800 PREDICTED: hypothetical protein [Homo sapiens] 242 5e-65
gi|169168791 PREDICTED: hypothetical protein [Homo sapiens] 242 5e-65
gi|169169282 PREDICTED: hypothetical protein [Homo sapiens] 242 5e-65
gi|239744051 PREDICTED: hypothetical protein XP_002343025 [Homo ... 35 0.013
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 33 0.065
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 33 0.065
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 33 0.065
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 32 0.085
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 32 0.085
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 32 0.085
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 32 0.085
gi|24497589 aristaless related homeobox [Homo sapiens] 32 0.11
gi|73476377 LBXCOR1 homolog [Homo sapiens] 31 0.25
gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog, yea... 30 0.42
gi|239753984 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|169168504 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|169167589 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 30 0.55
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 30 0.55
gi|61966923 forkhead box B2 [Homo sapiens] 30 0.55
gi|24497554 homeobox A13 [Homo sapiens] 29 0.72
gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo ... 29 0.72
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 29 0.72
gi|7019327 anaphase-promoting complex subunit 2 [Homo sapiens] 29 0.72
gi|239754599 PREDICTED: hypothetical protein [Homo sapiens] 29 0.94
gi|38570105 Ras-interacting protein 1 [Homo sapiens] 29 0.94
gi|110832843 TBP-associated factor 4 [Homo sapiens] 28 1.6
gi|12707580 paired-like homeobox 2b [Homo sapiens] 28 1.6
gi|112420992 crumbs homolog 2 [Homo sapiens] 28 1.6
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo... 28 2.1
>gi|169169800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 242 bits (617), Expect = 5e-65
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MAVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLP 60
MAVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLP
Sbjct: 1 MAVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLP 60
Query: 61 VDGIRRAESAWANVAVRRAEPWAGGTSEVVERRQGVDSEAWRPLGWSRAAGRWWKAAAQ 119
VDGIRRAESAWANVAVRRAEPWAGGTSEVVERRQGVDSEAWRPLGWSRAAGRWWKAAAQ
Sbjct: 61 VDGIRRAESAWANVAVRRAEPWAGGTSEVVERRQGVDSEAWRPLGWSRAAGRWWKAAAQ 119
>gi|169168791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 242 bits (617), Expect = 5e-65
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MAVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLP 60
MAVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLP
Sbjct: 1 MAVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLP 60
Query: 61 VDGIRRAESAWANVAVRRAEPWAGGTSEVVERRQGVDSEAWRPLGWSRAAGRWWKAAAQ 119
VDGIRRAESAWANVAVRRAEPWAGGTSEVVERRQGVDSEAWRPLGWSRAAGRWWKAAAQ
Sbjct: 61 VDGIRRAESAWANVAVRRAEPWAGGTSEVVERRQGVDSEAWRPLGWSRAAGRWWKAAAQ 119
>gi|169169282 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 242 bits (617), Expect = 5e-65
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MAVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLP 60
MAVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLP
Sbjct: 1 MAVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLP 60
Query: 61 VDGIRRAESAWANVAVRRAEPWAGGTSEVVERRQGVDSEAWRPLGWSRAAGRWWKAAAQ 119
VDGIRRAESAWANVAVRRAEPWAGGTSEVVERRQGVDSEAWRPLGWSRAAGRWWKAAAQ
Sbjct: 61 VDGIRRAESAWANVAVRRAEPWAGGTSEVVERRQGVDSEAWRPLGWSRAAGRWWKAAAQ 119
>gi|239744051 PREDICTED: hypothetical protein XP_002343025 [Homo
sapiens]
Length = 306
Score = 35.0 bits (79), Expect = 0.013
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 6 ATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLPVDGIR 65
+ AA+ G ++G P C V A W V+ +RE GG +G+ P+ G+
Sbjct: 52 SVAASIQGPALGTRP-------CPWGVLAVGE-WAVSGCIRRERSTGGCEGSGTPLVGVE 103
Query: 66 RAESAWANVAVRRAEP---WAGGTSEVVERRQGVDSEA--WRPL-GWSRAAGRWWKAAA 118
+ RRA P WAG S R Q S A WR L S+++G+ AA
Sbjct: 104 LKAVRSSEEGSRRASPGLCWAGPGSLAAHRPQRWGSGALWWRRLPPRSQSSGQLHSCAA 162
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 5 AATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATL 59
AA A AA GG A GK A AAA+ AW A++ GT G T+
Sbjct: 399 AAAAGAAAGGQQA-AAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTM 452
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 5 AATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATL 59
AA A AA GG A GK A AAA+ AW A++ GT G T+
Sbjct: 399 AAAAGAAAGGQQA-AAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTM 452
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 5 AATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATL 59
AA A AA GG A GK A AAA+ AW A++ GT G T+
Sbjct: 399 AAAAGAAAGGQQA-AAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTM 452
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 32.3 bits (72), Expect = 0.085
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 4 AAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLPVDG 63
AAA A AA GGS G + G + AA AAAAA + A GGT+G + +G
Sbjct: 11 AAAAATAAVGGSAG----EQEGAMVAATQGAAAAAGSGAGTGGGTAS-GGTEGGSAESEG 65
Query: 64 IR 65
+
Sbjct: 66 AK 67
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 32.3 bits (72), Expect = 0.085
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 4 AAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLPVDG 63
AAA A AA GGS G + G + AA AAAAA + A GGT+G + +G
Sbjct: 11 AAAAATAAVGGSAG----EQEGAMVAATQGAAAAAGSGAGTGGGTAS-GGTEGGSAESEG 65
Query: 64 IR 65
+
Sbjct: 66 AK 67
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 32.3 bits (72), Expect = 0.085
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 4 AAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLPVDG 63
AAA A AA GGS G + G + AA AAAAA + A GGT+G + +G
Sbjct: 11 AAAAATAAVGGSAG----EQEGAMVAATQGAAAAAGSGAGTGGGTAS-GGTEGGSAESEG 65
Query: 64 IR 65
+
Sbjct: 66 AK 67
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 32.3 bits (72), Expect = 0.085
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 4 AAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLPVDG 63
AAA A AA GGS G + G + AA AAAAA + A GGT+G + +G
Sbjct: 11 AAAAATAAVGGSAG----EQEGAMVAATQGAAAAAGSGAGTGGGTAS-GGTEGGSAESEG 65
Query: 64 IR 65
+
Sbjct: 66 AK 67
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/49 (44%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 2 AVAAATAAAAFGGSMGNAPAK-----------DRGKLCAAAVAAAAAAW 39
A AAA AA A G G AP D AAA AAAAAAW
Sbjct: 108 AAAAAAAATATAGPRGEAPPPPPPTARPGERPDGAGAAAAAAAAAAAAW 156
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 30.8 bits (68), Expect = 0.25
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 23/82 (28%)
Query: 2 AVAAATAAAA-------FGGSMGNAP------AKDRGKLCAAAVAAAAAAWTVAERDKRE 48
AVAAA AAA F + G+ P A+ + K AAAVAAAAAA A
Sbjct: 430 AVAAAAAAATVYPTFPMFWPAAGSLPVPSYPAAQSQAKAVAAAVAAAAAAAAAA------ 483
Query: 49 VERGGTQGATLPVDGIRRAESA 70
GA P+DG A+ +
Sbjct: 484 ----AGSGAPEPLDGAEPAKES 501
Score = 26.6 bits (57), Expect = 4.7
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 2 AVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTV 41
A A A F G + AKD AAAVAAAAAA TV
Sbjct: 406 AGAGPGGGAMFWGHQPSGAAKD-----AAAVAAAAAAATV 440
>gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog,
yeast) [Homo sapiens]
Length = 545
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 3 VAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLPV 61
V AA AAA + APA A A AA A W + RD E++ GAT V
Sbjct: 20 VTAAAAAAPAAATAAPAPAAPAAPAPAPAPAAQAVGWPIC-RDAYELQEVIGSGATAVV 77
>gi|239753984 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.0 bits (66), Expect = 0.42
Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 9 AAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQ----GATLPVDGI 64
A FGG+ G+A L AA +AA A T R + V G GA L +
Sbjct: 12 ARPFGGAAGSA-------LMEAAPNSAAPAST--GRPRAHVGSGADDPSPNGAALRLS-- 60
Query: 65 RRAESAWANVAVRRAEPWAG---GTSEVVERRQGVDSEAWRPLGWSRAAGR 112
A A A AE W+G GT + Q + AW P G S+ + R
Sbjct: 61 --VREAGALGAPELAEQWSGKGRGTRDCNRHFQALAPRAWSPQGHSQGSSR 109
>gi|169168504 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.0 bits (66), Expect = 0.42
Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 9 AAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQ----GATLPVDGI 64
A FGG+ G+A L AA +AA A T R + V G GA L +
Sbjct: 12 ARPFGGAAGSA-------LMEAAPNSAAPAST--GRPRAHVGSGADDPSPNGAALRLS-- 60
Query: 65 RRAESAWANVAVRRAEPWAG---GTSEVVERRQGVDSEAWRPLGWSRAAGR 112
A A A AE W+G GT + Q + AW P G S+ + R
Sbjct: 61 --VREAGALGAPELAEQWSGKGRGTRDCNRHFQALAPRAWSPQGHSQGSSR 109
>gi|169167589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.0 bits (66), Expect = 0.42
Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 9 AAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQ----GATLPVDGI 64
A FGG+ G+A L AA +AA A T R + V G GA L +
Sbjct: 12 ARPFGGAAGSA-------LMEAAPNSAAPAST--GRPRAHVGSGADDPSPNGAALRLS-- 60
Query: 65 RRAESAWANVAVRRAEPWAG---GTSEVVERRQGVDSEAWRPLGWSRAAGR 112
A A A AE W+G GT + Q + AW P G S+ + R
Sbjct: 61 --VREAGALGAPELAEQWSGKGRGTRDCNRHFQALAPRAWSPQGHSQGSSR 109
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 2 AVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDK 46
A +A+ A GGS G A A+D L A A AA W V + K
Sbjct: 161 ASCSASLPGALGGSAGAAGAEDSYGLVAPATAAYREVWQVNLKPK 205
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 1 MAVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAA 37
+A AAA AAAA + APA A A+AAAAA
Sbjct: 499 IAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAA 535
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 2 AVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAA 38
A+AAA AAAA + A A AAA A AAAA
Sbjct: 498 AIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAA 534
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 5 AATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAA 38
AA AA A + APA AAA AAAA+A
Sbjct: 531 AAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASA 564
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 2 AVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAA 37
A AAA AAAA ++ A A A A+AAAAA
Sbjct: 508 AAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAA 543
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 1 MAVAAATAAAAFGGSMGNA---PAKDRGKLCAAAVAAAAA 37
+A AAA AAAA GS+G P G AAA AAAA+
Sbjct: 223 VAAAAAAAAAAAVGSVGRLSQFPPYGLGSAAAAAAAAAAS 262
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 29.3 bits (64), Expect = 0.72
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 2 AVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAER 44
A AAA AA A GG + A G + A AAAAAA A +
Sbjct: 44 AAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQ 86
Score = 29.3 bits (64), Expect = 0.72
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 2 AVAAATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAA 38
A A AA+A+ + G AP AAA AAAAAA
Sbjct: 95 APLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAA 131
Score = 28.9 bits (63), Expect = 0.94
Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 2 AVAAATAAAAFGGSMGN-----APAKDRGKLCAAAVAAAAAA 38
A AAA AAAA G+ G A A G AA AAAAAA
Sbjct: 40 AAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAA 81
Score = 26.2 bits (56), Expect = 6.1
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 2 AVAAATAAAAFGGSMGNAPAKDRG----KLCAAAVAAAAAA 38
A AAA AAAA S G PA G K C+ AAA ++
Sbjct: 123 AAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSS 163
>gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo
sapiens]
Length = 102
Score = 29.3 bits (64), Expect = 0.72
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 29 AAAVAAAAAAWTVAERDKREVE--RGGTQGATLPVDGIRRAESAWANVAVRRAEPWAGGT 86
A + ++ AA A R KRE RGG GA P G+ RAE+ R P GG
Sbjct: 35 ARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRAEAKG-----RNRRPPIGGA 89
Query: 87 SEVVERR 93
S +++ R
Sbjct: 90 SVLLDAR 96
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 29.3 bits (64), Expect = 0.72
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 20/103 (19%)
Query: 10 AAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLPVDGIRRAES 69
AA GG +DRG+ A+ E+ + E G+ G G
Sbjct: 231 AAGGGGRAYLRPRDRGRTQASP-----------EKLENRSEAPGSGGR----GGAAGGGG 275
Query: 70 AWANVAVRRAEPWAGGT-SEVVERRQGVDSEAWRPLGWSRAAG 111
W + R P AG + E E QG SEAW LGW+ A G
Sbjct: 276 GWTS---RAPSPQAGRSLQEGAEGGQGC-SEAWATLGWAAAGG 314
>gi|7019327 anaphase-promoting complex subunit 2 [Homo sapiens]
Length = 822
Score = 29.3 bits (64), Expect = 0.72
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 37 AAWTVAERDKREVERGGTQGATLPVDGIRRAESAWANVAVRRAEPWAGGTSEVVERRQGV 96
A+WT+ E K +PV +RR S W V R EP GT V+E +
Sbjct: 674 ASWTLEELSK---------AVKMPVALLRRRMSVWLQQGVLREEP--PGTFSVIEEERPQ 722
Query: 97 DSE 99
D +
Sbjct: 723 DRD 725
>gi|239754599 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 28.9 bits (63), Expect = 0.94
Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 8 AAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLPVDGIRRA 67
AAAA S+G K R + CAAA AAA E RG G P G ++A
Sbjct: 150 AAAAQAKSLGGGGKKPRRQKCAAAGQKAAA---------EESRRG---GGKKPRRGGQKA 197
Query: 68 ESAWANVAVRRAEPWAGGTSEVVERRQ-GVDSEAWRPLGWSRAAG 111
A A + A A GT RRQ + W G AAG
Sbjct: 198 VGAGAKKPQKAA---AAGTKTPRRRRQKAAKAAVW---GQKAAAG 236
>gi|38570105 Ras-interacting protein 1 [Homo sapiens]
Length = 963
Score = 28.9 bits (63), Expect = 0.94
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 9 AAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLPVDGIRRAE 68
A + GG G + D LC A AAA E + G L V + RA
Sbjct: 186 AGSPGGGPGESSCVDAFALCDALGRPAAAGVGSGEWRAEHLRVLGDSERPLLVQELWRAR 245
Query: 69 SAWA-------NVAVRRAEPWAGGTSEVVERRQGVDSEAWRP 103
WA RR E A G ++ +G + +WRP
Sbjct: 246 PGWARRFELRGREEARRLEQEAFGAAD----SEGTGAPSWRP 283
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 8 AAAAFGGSMGNAPAKD---------RGKLCAAAVAAAAAAWTVAERDKREVERGGTQGAT 58
AAA GGS G APA G+ A AAA A AE KR V+ T
Sbjct: 301 AAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQT 360
Query: 59 LPVDG 63
L G
Sbjct: 361 LAASG 365
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/52 (38%), Positives = 20/52 (38%)
Query: 5 AATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQG 56
A AA G G P K AAA AAAAAA A G QG
Sbjct: 221 AGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQG 272
>gi|112420992 crumbs homolog 2 [Homo sapiens]
Length = 1285
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 27 LCAAAVAAAAAAWTVAERDKRE--VERG-GTQGATLPVDGIRRAESAWANVAVRRAEPWA 83
L AA A W V G G GA LP+ G R A+ AW V + P A
Sbjct: 909 LLRAAAGALEGVWLAVRNGSLAGGVRGGHGLPGAVLPIPGPRVADGAWHRVRLAMERPAA 968
>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
sapiens]
Length = 323
Score = 27.7 bits (60), Expect = 2.1
Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 5 AATAAAAFGGSMGNAPAKDRGKLCAAAVAAAAAAWTVAERDKREVERGGTQGATLP-VDG 63
AATA A + PA L AA AAAAAA A V G+ LP V
Sbjct: 200 AATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAA------VSSASLPGSGLPSVGS 253
Query: 64 IRRAESAWANVAVRRAEPWAGG 85
IR + + A P GG
Sbjct: 254 IRPPHGLLKSPSAAAAAPLGGG 275
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.124 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,394,150
Number of Sequences: 37866
Number of extensions: 174250
Number of successful extensions: 1118
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 185
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.