Guide to the Human Genome
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Name: LOC100292017 Sequence: fasta or formatted (102aa) NCBI GI: 239755607
Description:

PREDICTED: hypothetical protein XP_002344620

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         15           3
 C cysteine            2.0          2           1
 D aspartate           2.0          2           1
 E glutamate           3.9          4           2
 F phenylalanine       1.0          1           1
 G glycine            20.6         21           4
 H histidine           2.0          2           1
 I isoleucine          1.0          1           1
 K lysine              2.0          2           1
 L leucine             2.9          3           2
 M methionine          2.0          2           1
 N asparagine          2.0          2           1
 P proline             9.8         10           2
 Q glutamine           1.0          1           1
 R arginine           15.7         16           2
 S serine              9.8         10           2
 T threonine           4.9          5           1
 V valine              1.0          1           1
 W tryptophan          2.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344620 
LOC100291634          0.094   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.094   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.094   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.094   PREDICTED: hypothetical protein 
LOC100291076          0.094   PREDICTED: hypothetical protein XP_002347846 
MBD2                  0.089   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.089   methyl-CpG binding domain protein 2 isoform 1 
FLJ10357              0.073   hypothetical protein LOC55701 
LOC100293375          0.068   PREDICTED: hypothetical protein 
NOTCH4                0.062   notch4 preproprotein 
LOC100293922          0.057   PREDICTED: hypothetical protein 
LOC100292773          0.057   PREDICTED: hypothetical protein 
LOC100291358          0.057   PREDICTED: hypothetical protein XP_002347390 
LOC100290063          0.057   PREDICTED: hypothetical protein XP_002346992 
LOC100287283          0.057   PREDICTED: hypothetical protein XP_002342840 
LOC100287283          0.057   PREDICTED: hypothetical protein 
FOXD2                 0.057   forkhead box D2 
LOC100292082          0.057   PREDICTED: hypothetical protein XP_002345881 
GLCCI1                0.057   glucocorticoid induced transcript 1 
OSBP                  0.057   oxysterol binding protein 
SORCS2                0.052   VPS10 domain receptor protein SORCS 2 
HRNR                  0.052   hornerin 
LOC100293975          0.052   PREDICTED: hypothetical protein 
LOC100290812          0.052   PREDICTED: hypothetical protein XP_002347678 
LOC100288007          0.052   PREDICTED: hypothetical protein 
LOC100288205          0.052   PREDICTED: hypothetical protein XP_002343496 
LOC100288382          0.052   PREDICTED: hypothetical protein XP_002342213 
LOC100288007          0.052   PREDICTED: hypothetical protein XP_002342192 
PAK4                  0.052   p21-activated kinase 4 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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