Guide to the Human Genome
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Name: LOC100129733 Sequence: fasta or formatted (119aa) NCBI GI: 169168791
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {119aa} PREDICTED: hypothetical protein
alt mRNA {119aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            27.7         33           6
 C cysteine            0.8          1           1
 D aspartate           3.4          4           1
 E glutamate           6.7          8           1
 F phenylalanine       0.8          1           1
 G glycine            10.9         13           2
 H histidine           0.0          0           0
 I isoleucine          0.8          1           1
 K lysine              3.4          4           1
 L leucine             2.5          3           1
 M methionine          1.7          2           1
 N asparagine          1.7          2           1
 P proline             3.4          4           1
 Q glutamine           2.5          3           1
 R arginine           10.9         13           2
 S serine              4.2          5           1
 T threonine           4.2          5           1
 V valine              8.4         10           2
 W tryptophan          5.9          7           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129733          1.000   PREDICTED: hypothetical protein 
LOC100129733          1.000   PREDICTED: hypothetical protein 
LOC100289168          0.046   PREDICTED: hypothetical protein XP_002343025 
ARID1B                0.037   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.037   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.037   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
HNRNPD                0.032   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.032   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPD                0.032   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.032   heterogeneous nuclear ribonucleoprotein D isoform d ...
ARX                   0.032   aristaless related homeobox 
LBXCOR1               0.028   LBXCOR1 homolog 
STK39                 0.023   serine threonine kinase 39 (STE20/SPS1 homolog, yea...
LOC100131397          0.023   PREDICTED: hypothetical protein 
LOC100131397          0.023   PREDICTED: hypothetical protein 
LOC100131397          0.023   PREDICTED: hypothetical protein 
IRS2                  0.023   insulin receptor substrate 2 
FAM48B1               0.023   hypothetical protein LOC100130302 
FOXB2                 0.023   forkhead box B2 
HOXA13                0.018   homeobox A13 
LOC100292017          0.018   PREDICTED: hypothetical protein XP_002344620 
LTK                   0.018   leukocyte receptor tyrosine kinase isoform 1 precurs...
ANAPC2                0.018   anaphase-promoting complex subunit 2 
LOC100292383          0.018   PREDICTED: hypothetical protein 
RASIP1                0.018   Ras-interacting protein 1 
TAF4                  0.014   TBP-associated factor 4 
PHOX2B                0.014   paired-like homeobox 2b 
CRB2                  0.014   crumbs homolog 2 
OLIG2                 0.014   oligodendrocyte lineage transcription factor 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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