Guide to the Human Genome
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Name: LOC100132919 Sequence: fasta or formatted (528aa) NCBI GI: 169169315
Description:

PREDICTED: similar to hCG1642312

Not currently referenced in the text

Other entries for this name:
alt prot {528aa} PREDICTED: similar to hCG1642312
alt prot {528aa} PREDICTED: similar to hCG1642312
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0         16           1
 C cysteine            2.1         11           2
 D aspartate           2.5         13           2
 E glutamate           4.0         21           2
 F phenylalanine       8.5         45           2
 G glycine             5.3         28           2
 H histidine           1.7          9           1
 I isoleucine          2.8         15           1
 K lysine             10.4         55           3
 L leucine             9.7         51           3
 M methionine          1.5          8           1
 N asparagine          1.3          7           1
 P proline             2.1         11           1
 Q glutamine           2.8         15           2
 R arginine            2.1         11           1
 S serine              9.8         52           3
 T threonine          14.4         76           2
 V valine             14.0         74           1
 W tryptophan          0.8          4           1
 Y tyrosine            1.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1642312 
LOC100132919          0.990   PREDICTED: similar to hCG1642312 
LOC100132919          0.990   PREDICTED: similar to hCG1642312 
TARDBP                0.168   TAR DNA binding protein 
LOC100133553          0.050   PREDICTED: hypothetical protein, partial 
LOC100128719          0.046   PREDICTED: hypothetical protein, partial 
LOC100128719          0.046   PREDICTED: hypothetical protein, partial 
HNRNPD                0.041   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.041   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPD                0.041   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.041   heterogeneous nuclear ribonucleoprotein D isoform d ...
HNRNPAB               0.039   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPAB               0.039   heterogeneous nuclear ribonucleoprotein A/B isoform ...
LOC100134139          0.036   PREDICTED: hypothetical protein 
HNRPDL                0.035   heterogeneous nuclear ribonucleoprotein D-like [Homo...
LOC100134244          0.035   PREDICTED: similar to hCG1821260 
MSI1                  0.034   musashi 1 
MSI2                  0.031   musashi 2 isoform b 
MSI2                  0.030   musashi 2 isoform a 
DAZAP1                0.027   DAZ associated protein 1 isoform a 
DAZAP1                0.027   DAZ associated protein 1 isoform b 
TRA2A                 0.027   transformer-2 alpha 
LOC100134325          0.024   PREDICTED: hypothetical protein 
RBM19                 0.024   RNA binding motif protein 19 
RBM19                 0.024   RNA binding motif protein 19 
RBM19                 0.024   RNA binding motif protein 19 
ELAVL2                0.024   ELAV (embryonic lethal, abnormal vision, Drosophila...
PABPC1L               0.023   poly(A)-binding protein, cytoplasmic 1-like 
C14orf156             0.023   SRA stem-loop-interacting RNA-binding protein 
HNRNPA1               0.021   heterogeneous nuclear ribonucleoprotein A1 isoform b...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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