Guide to the Human Genome
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Name: LOC100134244 Sequence: fasta or formatted (526aa) NCBI GI: 169214883
Description:

PREDICTED: similar to hCG1821260

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         30           3
 C cysteine            1.5          8           1
 D aspartate           5.3         28           2
 E glutamate           5.9         31           3
 F phenylalanine       2.1         11           1
 G glycine             8.4         44           2
 H histidine           2.1         11           1
 I isoleucine          2.9         15           2
 K lysine              7.0         37           1
 L leucine            15.4         81           2
 M methionine          1.1          6           1
 N asparagine          6.3         33           1
 P proline             5.3         28           2
 Q glutamine           2.1         11           1
 R arginine            4.0         21           2
 S serine              5.1         27           2
 T threonine           3.2         17           2
 V valine             13.1         69           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.7         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1821260 
CDH4                  0.053   cadherin 4, type 1 preproprotein 
LOC100132919          0.034   PREDICTED: similar to hCG1642312 
LOC100290496          0.028   PREDICTED: hypothetical protein XP_002348126 
LOC100132919          0.020   PREDICTED: similar to hCG1642312 
LOC100132919          0.019   PREDICTED: similar to hCG1642312 
ZEB1                  0.015   zinc finger E-box binding homeobox 1 isoform a [Hom...
ZEB1                  0.015   zinc finger E-box binding homeobox 1 isoform b [Hom...
GPATCH4               0.011   G patch domain containing 4 isoform 2 
GPATCH4               0.011   G patch domain containing 4 isoform 1 
CDH2                  0.010   cadherin 2, type 1 preproprotein 
ASH1L                 0.008   absent, small, or homeotic 1-like 
LRRC70                0.008   synleurin 
FOXE3                 0.007   forkhead box E3 
MARVELD3              0.007   MARVEL domain containing 3 isoform 1 
MARVELD3              0.007   MARVEL domain containing 3 isoform 2 
LOC100291644          0.006   PREDICTED: hypothetical protein XP_002346069 
LRIG2                 0.006   leucine-rich repeats and immunoglobulin-like domains ...
FIGNL2                0.004   fidgetin-like 2 
LRIG3                 0.004   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.004   leucine-rich repeats and immunoglobulin-like domain...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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