Guide to the Human Genome
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Name: C14orf156 Sequence: fasta or formatted (109aa) NCBI GI: 13654278
Description:

SRA stem-loop-interacting RNA-binding protein

Referenced in:

Noncoding RNAs and Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         12           3
 C cysteine            0.9          1           1
 D aspartate           4.6          5           2
 E glutamate           5.5          6           2
 F phenylalanine       6.4          7           1
 G glycine             6.4          7           1
 H histidine           4.6          5           1
 I isoleucine          4.6          5           2
 K lysine              5.5          6           2
 L leucine             6.4          7           1
 M methionine          0.9          1           1
 N asparagine          2.8          3           1
 P proline             4.6          5           1
 Q glutamine           7.3          8           2
 R arginine           10.1         11           2
 S serine              6.4          7           2
 T threonine           3.7          4           1
 V valine              6.4          7           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SRA stem-loop-interacting RNA-binding protein 
HNRNPD                0.151   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.151   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPD                0.151   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.151   heterogeneous nuclear ribonucleoprotein D isoform d ...
HNRNPAB               0.141   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPAB               0.141   heterogeneous nuclear ribonucleoprotein A/B isoform ...
RBM28                 0.141   RNA binding motif protein 28 
MSI1                  0.131   musashi 1 
DAZAP1                0.131   DAZ associated protein 1 isoform a 
DAZAP1                0.131   DAZ associated protein 1 isoform b 
MSI2                  0.121   musashi 2 isoform a 
MSI2                  0.121   musashi 2 isoform b 
HNRNPA0               0.121   heterogeneous nuclear ribonucleoprotein A0 
HNRPDL                0.116   heterogeneous nuclear ribonucleoprotein D-like [Homo...
LOC100132919          0.116   PREDICTED: similar to hCG1642312 
LOC100132919          0.116   PREDICTED: similar to hCG1642312 
LOC100132919          0.116   PREDICTED: similar to hCG1642312 
RBM24                 0.116   RNA binding motif protein 24 isoform 1 
RBM38                 0.111   RNA-binding region containing protein 1 isoform b [H...
RBM38                 0.111   RNA-binding region containing protein 1 isoform a [H...
PABPN1                0.111   poly(A) binding protein, nuclear 1 
TARDBP                0.106   TAR DNA binding protein 
CSTF2T                0.095   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
CSTF2                 0.090   cleavage stimulation factor subunit 2 
LOC390748             0.090   similar to poly(A)binding protein nuclear-like 1 [H...
RBM19                 0.085   RNA binding motif protein 19 
RBM19                 0.085   RNA binding motif protein 19 
RBM19                 0.085   RNA binding motif protein 19 
NCL                   0.085   nucleolin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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