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Search of human proteins with 169169162
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169169162 PREDICTED: similar to hCG1642312 [Homo sapiens]
(528 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169169162 PREDICTED: similar to hCG1642312 [Homo sapiens] 1024 0.0
gi|169168866 PREDICTED: similar to hCG1642312 [Homo sapiens] 1018 0.0
gi|169169315 PREDICTED: similar to hCG1642312 [Homo sapiens] 1016 0.0
gi|6678271 TAR DNA binding protein [Homo sapiens] 193 4e-49
gi|169166886 PREDICTED: hypothetical protein, partial [Homo sapi... 80 6e-15
gi|239751395 PREDICTED: hypothetical protein, partial [Homo sapi... 69 1e-11
gi|239745904 PREDICTED: hypothetical protein, partial [Homo sapi... 69 1e-11
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 66 9e-11
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 66 9e-11
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 66 9e-11
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 66 9e-11
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 64 3e-10
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 64 3e-10
gi|169210316 PREDICTED: hypothetical protein [Homo sapiens] 62 2e-09
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 60 4e-09
gi|4505255 musashi 1 [Homo sapiens] 59 1e-08
gi|25121993 musashi 2 isoform b [Homo sapiens] 56 7e-08
gi|20373175 musashi 2 isoform a [Homo sapiens] 55 2e-07
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 52 2e-06
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 52 2e-06
gi|9558733 transformer-2 alpha [Homo sapiens] 52 2e-06
gi|239757884 PREDICTED: hypothetical protein [Homo sapiens] 50 4e-06
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 49 1e-05
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 49 1e-05
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 49 1e-05
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 49 1e-05
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 48 2e-05
gi|13654278 SRA stem-loop-interacting RNA-binding protein [Homo ... 48 3e-05
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 46 7e-05
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 46 7e-05
>gi|169169162 PREDICTED: similar to hCG1642312 [Homo sapiens]
Length = 528
Score = 1024 bits (2648), Expect = 0.0
Identities = 528/528 (100%), Positives = 528/528 (100%)
Query: 1 MCHCPLRLTAQHSGIPGAHPEQIPLGGSTHCLSVCSPWDFGNEKAFGVIEIKSPCVGAWA 60
MCHCPLRLTAQHSGIPGAHPEQIPLGGSTHCLSVCSPWDFGNEKAFGVIEIKSPCVGAWA
Sbjct: 1 MCHCPLRLTAQHSGIPGAHPEQIPLGGSTHCLSVCSPWDFGNEKAFGVIEIKSPCVGAWA 60
Query: 61 VKAMDQEARQVSTEGHSSSGGQNAGEHSTTVGFTKVIWMLKMKKKVYKGKSNLLLSDESY 120
VKAMDQEARQVSTEGHSSSGGQNAGEHSTTVGFTKVIWMLKMKKKVYKGKSNLLLSDESY
Sbjct: 61 VKAMDQEARQVSTEGHSSSGGQNAGEHSTTVGFTKVIWMLKMKKKVYKGKSNLLLSDESY 120
Query: 121 CVKVPCSTEEAIEVFSTPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 180
CVKVPCSTEEAIEVFSTPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVL
Sbjct: 121 CVKVPCSTEEAIEVFSTPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 180
Query: 181 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 240
TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK
Sbjct: 181 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 240
Query: 241 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 300
VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL
Sbjct: 241 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 300
Query: 301 TFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKGSVLTFTK 360
TFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKGSVLTFTK
Sbjct: 301 TFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKGSVLTFTK 360
Query: 361 DNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV 420
DNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV
Sbjct: 361 DNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV 420
Query: 421 RTGYSKGFGFVHFIKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCT 480
RTGYSKGFGFVHFIKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCT
Sbjct: 421 RTGYSKGFGFVHFIKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCT 480
Query: 481 EIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLTLQMISLPSLFVERT 528
EIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLTLQMISLPSLFVERT
Sbjct: 481 EIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLTLQMISLPSLFVERT 528
>gi|169168866 PREDICTED: similar to hCG1642312 [Homo sapiens]
Length = 528
Score = 1018 bits (2632), Expect = 0.0
Identities = 526/528 (99%), Positives = 526/528 (99%)
Query: 1 MCHCPLRLTAQHSGIPGAHPEQIPLGGSTHCLSVCSPWDFGNEKAFGVIEIKSPCVGAWA 60
MCHCPLRLTAQHSGIPGAHPEQIPLGGSTHCLSVCSPWDFGNEKAFGVIEIKSPCVGAWA
Sbjct: 1 MCHCPLRLTAQHSGIPGAHPEQIPLGGSTHCLSVCSPWDFGNEKAFGVIEIKSPCVGAWA 60
Query: 61 VKAMDQEARQVSTEGHSSSGGQNAGEHSTTVGFTKVIWMLKMKKKVYKGKSNLLLSDESY 120
VKAMDQEARQVSTEGHSSSGGQNAGEHSTTVGFTKVIWMLKMKKKVYKGKSNLLLSDESY
Sbjct: 61 VKAMDQEARQVSTEGHSSSGGQNAGEHSTTVGFTKVIWMLKMKKKVYKGKSNLLLSDESY 120
Query: 121 CVKVPCSTEEAIEVFSTPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 180
CVKVPCSTEEAIEVFSTPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVL
Sbjct: 121 CVKVPCSTEEAIEVFSTPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 180
Query: 181 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 240
TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK
Sbjct: 181 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 240
Query: 241 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 300
VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL
Sbjct: 241 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 300
Query: 301 TFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKGSVLTFTK 360
TFTKVSVLTFTKVSVLTFTK SVLTFTKVSVLTFTK SVLTFTKGSVLTFTKGSVLTFTK
Sbjct: 301 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKGSVLTFTKGSVLTFTK 360
Query: 361 DNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV 420
DNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV
Sbjct: 361 DNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV 420
Query: 421 RTGYSKGFGFVHFIKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCT 480
RTGYSKGFGFVHFIKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCT
Sbjct: 421 RTGYSKGFGFVHFIKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCT 480
Query: 481 EIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLTLQMISLPSLFVERT 528
EIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLTLQMISLPSLFVERT
Sbjct: 481 EIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLTLQMISLPSLFVERT 528
>gi|169169315 PREDICTED: similar to hCG1642312 [Homo sapiens]
Length = 528
Score = 1016 bits (2627), Expect = 0.0
Identities = 525/528 (99%), Positives = 525/528 (99%)
Query: 1 MCHCPLRLTAQHSGIPGAHPEQIPLGGSTHCLSVCSPWDFGNEKAFGVIEIKSPCVGAWA 60
MCHCPLRLTAQHSGIPGAHPEQIPLGGSTHCLSVCSPWDFGNEKAFGVIEIKSPCVGAWA
Sbjct: 1 MCHCPLRLTAQHSGIPGAHPEQIPLGGSTHCLSVCSPWDFGNEKAFGVIEIKSPCVGAWA 60
Query: 61 VKAMDQEARQVSTEGHSSSGGQNAGEHSTTVGFTKVIWMLKMKKKVYKGKSNLLLSDESY 120
VKAMDQEARQVSTEGHSSSGGQNAGEHSTTVGFTKVIWMLKMKKKVYKGKSNLLLSDESY
Sbjct: 61 VKAMDQEARQVSTEGHSSSGGQNAGEHSTTVGFTKVIWMLKMKKKVYKGKSNLLLSDESY 120
Query: 121 CVKVPCSTEEAIEVFSTPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 180
CVKVPCSTEEAIEVFSTPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVL
Sbjct: 121 CVKVPCSTEEAIEVFSTPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 180
Query: 181 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 240
TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK
Sbjct: 181 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 240
Query: 241 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 300
VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL
Sbjct: 241 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 300
Query: 301 TFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKGSVLTFTK 360
TFTKVSVLTFTK SVLTFTKGSVLTFTK SVLTFTK SVLTFTKGSVLTFTKGSVLTFTK
Sbjct: 301 TFTKVSVLTFTKGSVLTFTKGSVLTFTKGSVLTFTKGSVLTFTKGSVLTFTKGSVLTFTK 360
Query: 361 DNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV 420
DNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV
Sbjct: 361 DNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDV 420
Query: 421 RTGYSKGFGFVHFIKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCT 480
RTGYSKGFGFVHFIKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCT
Sbjct: 421 RTGYSKGFGFVHFIKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCT 480
Query: 481 EIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLTLQMISLPSLFVERT 528
EIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLTLQMISLPSLFVERT
Sbjct: 481 EIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLTLQMISLPSLFVERT 528
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 193 bits (490), Expect = 4e-49
Identities = 101/162 (62%), Positives = 123/162 (75%), Gaps = 4/162 (2%)
Query: 355 VLTFTKDNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMV 414
V+ + KDN RK ++TD S A+KVKRAVQKTS L VLGLPWKTTEQDLKEYFSTFGE+LMV
Sbjct: 74 VVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMV 133
Query: 415 QVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQIDDG--VTVQFLTLKQTLNETLRSK 472
QVKKD++TG+SKGFGFV F +YETQVK R + DG + KQ+ +E LRS+
Sbjct: 134 QVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLPNSKQSQDEPLRSR 191
Query: 473 KMFVGCCTEIMNSDKLQQFFGHCREVIDVFISKPFRDFAFLT 514
K+FVG CTE M D+L++FF +V+DVFI KPFR FAF+T
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVT 233
>gi|169166886 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 202
Score = 79.7 bits (195), Expect = 6e-15
Identities = 35/177 (19%), Positives = 84/177 (47%), Gaps = 8/177 (4%)
Query: 165 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 224
T + + +T + + T T + + T+ + + T+T T+ + + T+T + + +T
Sbjct: 1 THIHIYIYVYTHIHIYTRTSIHIYTYIHIHLYTYT----YTYIHIRLYTYTHIYIYVYTH 56
Query: 225 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 284
+ + T+T + V +T + V +T + V +T + V +T + V +T + V +T + V
Sbjct: 57 IHIYTYTSIHVCIYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVC 116
Query: 285 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTKVSVLT 341
+T + V +T + T + T + + T+ + +T + + T+ + + T
Sbjct: 117 VYTHIHVCVYTHTCMCIHTHTCMYIHTYMYIHTY----IYVYTHICIYTYIHICIYT 169
Score = 77.4 bits (189), Expect = 3e-14
Identities = 34/171 (19%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 151 LKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVS 210
+ + + +T + + T T + + T+ + + T+T T+ + + T+T + + +T +
Sbjct: 3 IHIYIYVYTHIHIYTRTSIHIYTYIHIHLYTYT----YTYIHIRLYTYTHIYIYVYTHIH 58
Query: 211 VLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTF 270
+ T+T + V +T + V +T + V +T + V +T + V +T + V +T + V +
Sbjct: 59 IYTYTSIHVCIYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVY 118
Query: 271 TKVSVLTFTKVSVLTFTKVSVLTFTKVSVLT----FTKVSVLTFTKVSVLT 317
T + V +T + T + T + + T +T + + T+ + + T
Sbjct: 119 THIHVCVYTHTCMCIHTHTCMYIHTYMYIHTYIYVYTHICIYTYIHICIYT 169
Score = 73.9 bits (180), Expect = 3e-13
Identities = 32/154 (20%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 189 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 248
T + + +T + + T T + + T+ + + T+T T+ + + T+T + + +T
Sbjct: 1 THIHIYIYVYTHIHIYTRTSIHIYTYIHIHLYTYT----YTYIHIRLYTYTHIYIYVYTH 56
Query: 249 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 308
+ + T+T + V +T + V +T + V +T + V +T + V +T + V +T + V
Sbjct: 57 IHIYTYTSIHVCIYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVC 116
Query: 309 TFTKVSVLTFTKGSVLTFTKVSVLTFTKVSVLTF 342
+T + V +T + T + T + + T+
Sbjct: 117 VYTHIHVCVYTHTCMCIHTHTCMYIHTYMYIHTY 150
Score = 70.5 bits (171), Expect = 4e-12
Identities = 32/154 (20%), Positives = 72/154 (46%), Gaps = 4/154 (2%)
Query: 197 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 256
T + + +T + + T T + + T+ + + T+T T+ + + T+T + + +T
Sbjct: 1 THIHIYIYVYTHIHIYTRTSIHIYTYIHIHLYTYT----YTYIHIRLYTYTHIYIYVYTH 56
Query: 257 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 316
+ + T+T + V +T + V +T + V +T + V +T + V +T + V +T + V
Sbjct: 57 IHIYTYTSIHVCIYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVC 116
Query: 317 TFTKGSVLTFTKVSVLTFTKVSVLTFTKGSVLTF 350
+T V +T + T + T + T+
Sbjct: 117 VYTHIHVCVYTHTCMCIHTHTCMYIHTYMYIHTY 150
Score = 67.8 bits (164), Expect = 2e-11
Identities = 28/143 (19%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 157 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 216
T+ + + T+T + + +T + + T+T + V +T + V +T + V +T + V +T
Sbjct: 37 TYIHIRLYTYTHIYIYVYTHIHIYTYTSIHVCIYTHIHVCVYTHIHVCVYTHIHVCVYTH 96
Query: 217 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 276
+ V +T + V +T + V +T + V +T + T + T + + T+ +
Sbjct: 97 IHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHTCMCIHTHTCMYIHTYMYIHTY----IY 152
Query: 277 TFTKVSVLTFTKVSVLTFTKVSV 299
+T + + T+ + + T + +
Sbjct: 153 VYTHICIYTYIHICIYTHMYIHI 175
Score = 66.6 bits (161), Expect = 5e-11
Identities = 29/131 (22%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Query: 221 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 280
T + + +T + + T T + + T+ + + T+T T+ + + T+T + + +T
Sbjct: 1 THIHIYIYVYTHIHIYTRTSIHIYTYIHIHLYTYT----YTYIHIRLYTYTHIYIYVYTH 56
Query: 281 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTKVSVL 340
+ + T+T + V +T + V +T + V +T + V +T V +T + V +T + V
Sbjct: 57 IHIYTYTSIHVCIYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVC 116
Query: 341 TFTKGSVLTFT 351
+T V +T
Sbjct: 117 VYTHIHVCVYT 127
Score = 63.9 bits (154), Expect = 3e-10
Identities = 29/131 (22%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 229 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 288
T + + +T + + T T + + T+ + + T+T T+ + + T+T + + +T
Sbjct: 1 THIHIYIYVYTHIHIYTRTSIHIYTYIHIHLYTYT----YTYIHIRLYTYTHIYIYVYTH 56
Query: 289 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTKVSVLTFTKGSVL 348
+ + T+T + V +T + V +T + V +T V +T + V +T + V +T V
Sbjct: 57 IHIYTYTSIHVCIYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVCVYTHIHVC 116
Query: 349 TFTKGSVLTFT 359
+T V +T
Sbjct: 117 VYTHIHVCVYT 127
>gi|239751395 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 68.6 bits (166), Expect = 1e-11
Identities = 71/234 (30%), Positives = 87/234 (37%), Gaps = 2/234 (0%)
Query: 157 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 216
T T + T T S T T S T T S T+ S T T S T T + T T
Sbjct: 1 TLTPSNTPTLTPSSPPTLTPSSTPTLTPSSQPILTRSSTPTLTPSSPPTLTPSNTPTLTP 60
Query: 217 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 276
+ T T S T T S T T +L T+ S T T S T T + T T +
Sbjct: 61 SNTPTLTPSSTPTLTPSSTPTLTPQPIL--TRSSTPTLTPSSPPTLTPSNTPTLTPSNTP 118
Query: 277 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTK 336
T T + T T S T T S T T S T+ S T T S T+ S T T
Sbjct: 119 TLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTP 178
Query: 337 VSVLTFTKGSVLTFTKGSVLTFTKDNYRKREKTDTSLAIKVKRAVQKTSALAVL 390
S T T S T T S T T + ++ T R + S+ L
Sbjct: 179 SSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTL 232
Score = 67.8 bits (164), Expect = 2e-11
Identities = 68/206 (33%), Positives = 78/206 (37%), Gaps = 2/206 (0%)
Query: 157 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 216
T T S T T S T T +L T+ S T T S T T + T T + T T
Sbjct: 65 TLTPSSTPTLTPSSTPTLTPQPIL--TRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTP 122
Query: 217 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 276
+ T T S T T S T T S T+ S T T S T+ S T T S
Sbjct: 123 SNTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTPSSTP 182
Query: 277 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTK 336
T T S T T S T T S T+ S T T S T S T T S T+
Sbjct: 183 TLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLTPSSRPILTR 242
Query: 337 VSVLTFTKGSVLTFTKGSVLTFTKDN 362
S T T S T T + T T N
Sbjct: 243 SSTPTLTPSSTPTLTPSNTPTLTPSN 268
Score = 67.0 bits (162), Expect = 4e-11
Identities = 68/209 (32%), Positives = 79/209 (37%), Gaps = 2/209 (0%)
Query: 154 SVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLT 213
S T T S T T +L T+ S T T S T T + T T + T T + T
Sbjct: 70 STPTLTPSSTPTLTPQPIL--TRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPT 127
Query: 214 FTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKV 273
T S T T S T T S T+ S T T S T+ S T T S T T
Sbjct: 128 LTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPS 187
Query: 274 SVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLT 333
S T T S T T S T+ S T T S T S T T S T+ S T
Sbjct: 188 STPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLTPSSRPILTRSSTPT 247
Query: 334 FTKVSVLTFTKGSVLTFTKGSVLTFTKDN 362
T S T T + T T + T T N
Sbjct: 248 LTPSSTPTLTPSNTPTLTPSNTPTLTPSN 276
Score = 65.9 bits (159), Expect = 9e-11
Identities = 70/227 (30%), Positives = 89/227 (39%), Gaps = 4/227 (1%)
Query: 136 STPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 195
STP ++ + + + + + S T T S T T + T T + T T S T T S
Sbjct: 22 STPTLTPSSQPI--LTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSST 79
Query: 196 LTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT 255
T T +L T+ S T T S T T + T T + T T + T T S T T
Sbjct: 80 PTLTPQPIL--TRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLT 137
Query: 256 KVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 315
S T T S T+ S T T S T+ S T T S T T S T T S
Sbjct: 138 PSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSST 197
Query: 316 LTFTKGSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKGSVLTFTKDN 362
T T S T+ S T T S T S T T S T+ +
Sbjct: 198 PTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLTPSSRPILTRSS 244
Score = 65.9 bits (159), Expect = 9e-11
Identities = 68/212 (32%), Positives = 78/212 (36%), Gaps = 6/212 (2%)
Query: 157 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL------TFTKVSVLTFTKVS 210
T T + T T + T T S T T S T T +L T T S T T +
Sbjct: 49 TLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPQPILTRSSTPTLTPSSPPTLTPSN 108
Query: 211 VLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTF 270
T T + T T + T T S T T S T T S T+ S T T S
Sbjct: 109 TPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPIL 168
Query: 271 TKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVS 330
T+ S T T S T T S T T S T T S T+ S T T S T S
Sbjct: 169 TRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSS 228
Query: 331 VLTFTKVSVLTFTKGSVLTFTKGSVLTFTKDN 362
T T S T+ S T T S T T N
Sbjct: 229 TPTLTPSSRPILTRSSTPTLTPSSTPTLTPSN 260
Score = 63.5 bits (153), Expect = 4e-10
Identities = 67/208 (32%), Positives = 80/208 (38%), Gaps = 4/208 (1%)
Query: 154 SVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVS--V 211
S T T S T T + T T + T T + T T S T T S T T S +
Sbjct: 92 STPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPI 151
Query: 212 LTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT 271
LT + LT + +L T+ S T T S T T S T T S T T S T
Sbjct: 152 LTRSSTPTLTPSSRPIL--TRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILT 209
Query: 272 KVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSV 331
+ S T T S T S T T S T+ S T T S T T + T T +
Sbjct: 210 RSSTPTLTPSSRPILTPSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSNTPTLTPSNT 269
Query: 332 LTFTKVSVLTFTKGSVLTFTKGSVLTFT 359
T T + T T S T T S T T
Sbjct: 270 PTLTPSNTPTLTPSSTPTLTPSSTPTLT 297
Score = 63.2 bits (152), Expect = 6e-10
Identities = 66/212 (31%), Positives = 78/212 (36%), Gaps = 6/212 (2%)
Query: 154 SVLTFTKVSVLTFTKVSVL------TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT 207
S T T +LT + L T T + T T + T T + T T S T T
Sbjct: 78 STPTLTPQPILTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLT 137
Query: 208 KVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 267
S T T S T+ S T T S T+ S T T S T T S T T S
Sbjct: 138 PSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSST 197
Query: 268 LTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFT 327
T T S T+ S T T S T S T T S T+ S T T S T T
Sbjct: 198 PTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLTPSSRPILTRSSTPTLTPSSTPTLT 257
Query: 328 KVSVLTFTKVSVLTFTKGSVLTFTKGSVLTFT 359
+ T T + T T + T T S T T
Sbjct: 258 PSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLT 289
Score = 60.1 bits (144), Expect = 5e-09
Identities = 62/212 (29%), Positives = 81/212 (38%), Gaps = 2/212 (0%)
Query: 136 STPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 195
STP ++ + LT + LT + LT + LT + LT + +
Sbjct: 92 STPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPI 151
Query: 196 LTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT 255
LT + LT + +L T+ S T T S T T S T T S T T S T
Sbjct: 152 LTRSSTPTLTPSSRPIL--TRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILT 209
Query: 256 KVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 315
+ S T T S T S T T S T+ S T T S T T + T T +
Sbjct: 210 RSSTPTLTPSSRPILTPSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSNTPTLTPSNT 269
Query: 316 LTFTKGSVLTFTKVSVLTFTKVSVLTFTKGSV 347
T T + T T S T T S T T S+
Sbjct: 270 PTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSL 301
>gi|239745904 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 68.6 bits (166), Expect = 1e-11
Identities = 71/234 (30%), Positives = 87/234 (37%), Gaps = 2/234 (0%)
Query: 157 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 216
T T + T T S T T S T T S T+ S T T S T T + T T
Sbjct: 1 TLTPSNTPTLTPSSPPTLTPSSTPTLTPSSQPILTRSSTPTLTPSSPPTLTPSNTPTLTP 60
Query: 217 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 276
+ T T S T T S T T +L T+ S T T S T T + T T +
Sbjct: 61 SNTPTLTPSSTPTLTPSSTPTLTPQPIL--TRSSTPTLTPSSPPTLTPSNTPTLTPSNTP 118
Query: 277 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTK 336
T T + T T S T T S T T S T+ S T T S T+ S T T
Sbjct: 119 TLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTP 178
Query: 337 VSVLTFTKGSVLTFTKGSVLTFTKDNYRKREKTDTSLAIKVKRAVQKTSALAVL 390
S T T S T T S T T + ++ T R + S+ L
Sbjct: 179 SSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTL 232
Score = 67.8 bits (164), Expect = 2e-11
Identities = 68/206 (33%), Positives = 78/206 (37%), Gaps = 2/206 (0%)
Query: 157 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 216
T T S T T S T T +L T+ S T T S T T + T T + T T
Sbjct: 65 TLTPSSTPTLTPSSTPTLTPQPIL--TRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTP 122
Query: 217 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 276
+ T T S T T S T T S T+ S T T S T+ S T T S
Sbjct: 123 SNTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTPSSTP 182
Query: 277 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTK 336
T T S T T S T T S T+ S T T S T S T T S T+
Sbjct: 183 TLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLTPSSRPILTR 242
Query: 337 VSVLTFTKGSVLTFTKGSVLTFTKDN 362
S T T S T T + T T N
Sbjct: 243 SSTPTLTPSSTPTLTPSNTPTLTPSN 268
Score = 67.0 bits (162), Expect = 4e-11
Identities = 68/209 (32%), Positives = 79/209 (37%), Gaps = 2/209 (0%)
Query: 154 SVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLT 213
S T T S T T +L T+ S T T S T T + T T + T T + T
Sbjct: 70 STPTLTPSSTPTLTPQPIL--TRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPT 127
Query: 214 FTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKV 273
T S T T S T T S T+ S T T S T+ S T T S T T
Sbjct: 128 LTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPS 187
Query: 274 SVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLT 333
S T T S T T S T+ S T T S T S T T S T+ S T
Sbjct: 188 STPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLTPSSRPILTRSSTPT 247
Query: 334 FTKVSVLTFTKGSVLTFTKGSVLTFTKDN 362
T S T T + T T + T T N
Sbjct: 248 LTPSSTPTLTPSNTPTLTPSNTPTLTPSN 276
Score = 65.9 bits (159), Expect = 9e-11
Identities = 70/227 (30%), Positives = 89/227 (39%), Gaps = 4/227 (1%)
Query: 136 STPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 195
STP ++ + + + + + S T T S T T + T T + T T S T T S
Sbjct: 22 STPTLTPSSQPI--LTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSST 79
Query: 196 LTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT 255
T T +L T+ S T T S T T + T T + T T + T T S T T
Sbjct: 80 PTLTPQPIL--TRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLT 137
Query: 256 KVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 315
S T T S T+ S T T S T+ S T T S T T S T T S
Sbjct: 138 PSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSST 197
Query: 316 LTFTKGSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKGSVLTFTKDN 362
T T S T+ S T T S T S T T S T+ +
Sbjct: 198 PTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLTPSSRPILTRSS 244
Score = 65.9 bits (159), Expect = 9e-11
Identities = 68/212 (32%), Positives = 78/212 (36%), Gaps = 6/212 (2%)
Query: 157 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL------TFTKVSVLTFTKVS 210
T T + T T + T T S T T S T T +L T T S T T +
Sbjct: 49 TLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPQPILTRSSTPTLTPSSPPTLTPSN 108
Query: 211 VLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTF 270
T T + T T + T T S T T S T T S T+ S T T S
Sbjct: 109 TPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPIL 168
Query: 271 TKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVS 330
T+ S T T S T T S T T S T T S T+ S T T S T S
Sbjct: 169 TRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSS 228
Query: 331 VLTFTKVSVLTFTKGSVLTFTKGSVLTFTKDN 362
T T S T+ S T T S T T N
Sbjct: 229 TPTLTPSSRPILTRSSTPTLTPSSTPTLTPSN 260
Score = 63.5 bits (153), Expect = 4e-10
Identities = 67/208 (32%), Positives = 80/208 (38%), Gaps = 4/208 (1%)
Query: 154 SVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVS--V 211
S T T S T T + T T + T T + T T S T T S T T S +
Sbjct: 92 STPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPI 151
Query: 212 LTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT 271
LT + LT + +L T+ S T T S T T S T T S T T S T
Sbjct: 152 LTRSSTPTLTPSSRPIL--TRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILT 209
Query: 272 KVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSV 331
+ S T T S T S T T S T+ S T T S T T + T T +
Sbjct: 210 RSSTPTLTPSSRPILTPSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSNTPTLTPSNT 269
Query: 332 LTFTKVSVLTFTKGSVLTFTKGSVLTFT 359
T T + T T S T T S T T
Sbjct: 270 PTLTPSNTPTLTPSSTPTLTPSSTPTLT 297
Score = 63.2 bits (152), Expect = 6e-10
Identities = 66/212 (31%), Positives = 78/212 (36%), Gaps = 6/212 (2%)
Query: 154 SVLTFTKVSVLTFTKVSVL------TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT 207
S T T +LT + L T T + T T + T T + T T S T T
Sbjct: 78 STPTLTPQPILTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLT 137
Query: 208 KVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 267
S T T S T+ S T T S T+ S T T S T T S T T S
Sbjct: 138 PSSTPTLTPSSRPILTRSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSST 197
Query: 268 LTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFT 327
T T S T+ S T T S T S T T S T+ S T T S T T
Sbjct: 198 PTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLTPSSRPILTRSSTPTLTPSSTPTLT 257
Query: 328 KVSVLTFTKVSVLTFTKGSVLTFTKGSVLTFT 359
+ T T + T T + T T S T T
Sbjct: 258 PSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLT 289
Score = 60.1 bits (144), Expect = 5e-09
Identities = 62/212 (29%), Positives = 81/212 (38%), Gaps = 2/212 (0%)
Query: 136 STPFVSLADEGVTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 195
STP ++ + LT + LT + LT + LT + LT + +
Sbjct: 92 STPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPI 151
Query: 196 LTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT 255
LT + LT + +L T+ S T T S T T S T T S T T S T
Sbjct: 152 LTRSSTPTLTPSSRPIL--TRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILT 209
Query: 256 KVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 315
+ S T T S T S T T S T+ S T T S T T + T T +
Sbjct: 210 RSSTPTLTPSSRPILTPSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSNTPTLTPSNT 269
Query: 316 LTFTKGSVLTFTKVSVLTFTKVSVLTFTKGSV 347
T T + T T S T T S T T S+
Sbjct: 270 PTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSL 301
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 65.9 bits (159), Expect = 9e-11
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 391 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQI 450
GL W TT++DLK+YFS FGE++ +K D TG S+GFGFV F + E+ K ++
Sbjct: 103 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 162
Query: 451 DDGVTVQFLTLKQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGHCREVIDVFI-----SK 505
+ V E + KK+FVG + +K++++FG EV + + +
Sbjct: 163 NGKVIDPKRAKAMKTKEPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220
Query: 506 PFRDFAFLTLQ 516
R F F+T +
Sbjct: 221 KRRGFCFITFK 231
Score = 42.7 bits (99), Expect = 8e-04
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 374 AIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHF 433
A+K K V+K + V GL T E+ ++EYF FGE+ +++ D +T +GF F+ F
Sbjct: 174 AMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 434 IKYETQVKE 442
K E VK+
Sbjct: 231 -KEEEPVKK 238
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 65.9 bits (159), Expect = 9e-11
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 391 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQI 450
GL W TT++DLK+YFS FGE++ +K D TG S+GFGFV F + E+ K ++
Sbjct: 103 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 162
Query: 451 DDGVTVQFLTLKQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGHCREVIDVFI-----SK 505
+ V E + KK+FVG + +K++++FG EV + + +
Sbjct: 163 NGKVIDPKRAKAMKTKEPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220
Query: 506 PFRDFAFLTLQ 516
R F F+T +
Sbjct: 221 KRRGFCFITFK 231
Score = 42.7 bits (99), Expect = 8e-04
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 374 AIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHF 433
A+K K V+K + V GL T E+ ++EYF FGE+ +++ D +T +GF F+ F
Sbjct: 174 AMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 434 IKYETQVKE 442
K E VK+
Sbjct: 231 -KEEEPVKK 238
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 65.9 bits (159), Expect = 9e-11
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 391 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQI 450
GL W TT++DLK+YFS FGE++ +K D TG S+GFGFV F + E+ K ++
Sbjct: 84 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 143
Query: 451 DDGVTVQFLTLKQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGHCREVIDVFI-----SK 505
+ V E + KK+FVG + +K++++FG EV + + +
Sbjct: 144 NGKVIDPKRAKAMKTKEPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 201
Query: 506 PFRDFAFLTLQ 516
R F F+T +
Sbjct: 202 KRRGFCFITFK 212
Score = 42.7 bits (99), Expect = 8e-04
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 374 AIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHF 433
A+K K V+K + V GL T E+ ++EYF FGE+ +++ D +T +GF F+ F
Sbjct: 155 AMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 211
Query: 434 IKYETQVKE 442
K E VK+
Sbjct: 212 -KEEEPVKK 219
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 65.9 bits (159), Expect = 9e-11
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 391 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQI 450
GL W TT++DLK+YFS FGE++ +K D TG S+GFGFV F + E+ K ++
Sbjct: 84 GLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL 143
Query: 451 DDGVTVQFLTLKQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGHCREVIDVFI-----SK 505
+ V E + KK+FVG + +K++++FG EV + + +
Sbjct: 144 NGKVIDPKRAKAMKTKEPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 201
Query: 506 PFRDFAFLTLQ 516
R F F+T +
Sbjct: 202 KRRGFCFITFK 212
Score = 42.7 bits (99), Expect = 8e-04
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 374 AIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHF 433
A+K K V+K + V GL T E+ ++EYF FGE+ +++ D +T +GF F+ F
Sbjct: 155 AMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 211
Query: 434 IKYETQVKE 442
K E VK+
Sbjct: 212 -KEEEPVKK 219
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 64.3 bits (155), Expect = 3e-10
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 10/148 (6%)
Query: 375 IKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFI 434
I + + + V GL W T+++DLK+YF+ FGE++ +K D TG S+GFGF+ F
Sbjct: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
Query: 435 KYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGH 494
+ K ++D V + + KK+FVG +K++++FG
Sbjct: 120 DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV---KKIFVGGLNPEATEEKIREYFGE 176
Query: 495 CREV------IDVFISKPFRDFAFLTLQ 516
E+ +D ++K R F F+T +
Sbjct: 177 FGEIEAIELPMDPKLNKR-RGFVFITFK 203
Score = 38.5 bits (88), Expect = 0.015
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 391 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKE 442
GL + TE+ ++EYF FGEI +++ D + +GF F+ F K E VK+
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF-KEEEPVKK 210
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 64.3 bits (155), Expect = 3e-10
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 10/148 (6%)
Query: 375 IKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFI 434
I + + + V GL W T+++DLK+YF+ FGE++ +K D TG S+GFGF+ F
Sbjct: 60 INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 119
Query: 435 KYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGH 494
+ K ++D V + + KK+FVG +K++++FG
Sbjct: 120 DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV---KKIFVGGLNPEATEEKIREYFGE 176
Query: 495 CREV------IDVFISKPFRDFAFLTLQ 516
E+ +D ++K R F F+T +
Sbjct: 177 FGEIEAIELPMDPKLNKR-RGFVFITFK 203
Score = 38.5 bits (88), Expect = 0.015
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 391 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKE 442
GL + TE+ ++EYF FGEI +++ D + +GF F+ F K E VK+
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF-KEEEPVKK 210
>gi|169210316 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 61.6 bits (148), Expect = 2e-09
Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 153 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 212
V V + + +T V +T V + T+T V + T+T V + T+T V + T+T V V
Sbjct: 114 VCVCVYIHIHTCVYTHVHTCVYTYVCIYTYTYVCIYTYTYVCIYTYTYVCIYTYTYVCVY 173
Query: 213 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTK 272
T V + V +T + T V + + +V + T+T V + T+T V V +
Sbjct: 174 THIHTCVCIHIYIRVCVYTHI----HTCVYIHIYIRVCIYTYTYVCIYTYTYVCV--YIH 227
Query: 273 VSVLTFTKVSVLTFTK----VSVLTFTKVSVLTFTKVSVLTFTKVSVLTF 318
+ T+ V V +T+ + + + + + + + V + + + +
Sbjct: 228 IHTCTYIHVYVYIYTRMYMYICIYVYMYICIYVYVCIYVYIYVYMCIYVY 277
Score = 60.5 bits (145), Expect = 4e-09
Identities = 40/177 (22%), Positives = 82/177 (46%), Gaps = 10/177 (5%)
Query: 147 VTAVLKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLT- 205
V + + +T V +T V + T+T V + T+T V + T+T V + T+T V V T
Sbjct: 116 VCVYIHIHTCVYTHVHTCVYTYVCIYTYTYVCIYTYTYVCIYTYTYVCIYTYTYVCVYTH 175
Query: 206 -FTKVSVLTFTKVSVLT--FTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTF 262
T V + + +V V T T V + + +V + T+T V + T+T V V + + T+
Sbjct: 176 IHTCVCIHIYIRVCVYTHIHTCVYIHIYIRVCIYTYTYVCIYTYTYVCV--YIHIHTCTY 233
Query: 263 TKVSVLTFTK----VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV 315
V V +T+ + + + + + + + V + + + + + + + + V
Sbjct: 234 IHVYVYIYTRMYMYICIYVYMYICIYVYVCIYVYIYVYMCIYVYICIYMCIYVYICV 290
Score = 52.4 bits (124), Expect = 1e-06
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 241 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 300
V V + + +T V +T V + T+T V + T+T V + T+T V + T+T V V
Sbjct: 114 VCVCVYIHIHTCVYTHVHTCVYTYVCIYTYTYVCIYTYTYVCIYTYTYVCIYTYTYVCVY 173
Query: 301 T--FTKVSVLTFTKVSVLTFTKGSVL--TFTKVSVLTFTKVSVLTFT 343
T T V + + +V V T V + +V + T+T V + T+T
Sbjct: 174 THIHTCVCIHIYIRVCVYTHIHTCVYIHIYIRVCIYTYTYVCIYTYT 220
Score = 47.8 bits (112), Expect = 3e-05
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 257 VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVL 316
V V + + +T V +T V + T+T V + T+T V + T+T V + T+T V V
Sbjct: 114 VCVCVYIHIHTCVYTHVHTCVYTYVCIYTYTYVCIYTYTYVCIYTYTYVCIYTYTYVCVY 173
Query: 317 TFTKGSVLTFTKVSVLTFTK----VSVLTFTKGSVLTFTKGSVLTFT 359
T V + V +T V + + + + T+T + T+T
Sbjct: 174 THIHTCVCIHIYIRVCVYTHIHTCVYIHIYIRVCIYTYTYVCIYTYT 220
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 60.5 bits (145), Expect = 4e-09
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 354 SVLTFTKDNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILM 413
SV + Y E+ I + Q + + GL W T+++DL EY S FGE++
Sbjct: 117 SVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVD 176
Query: 414 VQVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKK 473
+K D TG S+GFGFV F + K ++ DG + K L KK
Sbjct: 177 CTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKL-DGKLIDPKRAK-ALKGKEPPKK 234
Query: 474 MFVGCCTEIMNSDKLQQFFGHCREVIDVFI-----SKPFRDFAFLT 514
+FVG + + ++++++FG E+ ++ + + R F F+T
Sbjct: 235 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT 280
Score = 46.2 bits (108), Expect = 7e-05
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 376 KVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIK 435
K + + + V GL T+E+ +KEYF FGEI +++ D +T +GF F+ +
Sbjct: 224 KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTD 283
Query: 436 YETQVKECHSNIRQIDDG 453
E K S QI G
Sbjct: 284 EEPVKKLLESRYHQIGSG 301
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 58.5 bits (140), Expect = 1e-08
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 391 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQI 450
GL W+TT++ L+EYF FGE+ V +D T S+GFGFV F+ K + ++
Sbjct: 26 GLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 85
Query: 451 DDGV---TVQFLTLKQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGHCREVIDVFI---- 503
D V F Q T R+KK+FVG + + ++Q+F +V D +
Sbjct: 86 DSKTIDPKVAFPRRAQPKMVT-RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDK 144
Query: 504 -SKPFRDFAFLTLQ 516
+ R F F+T +
Sbjct: 145 TTNRHRGFGFVTFE 158
Score = 46.2 bits (108), Expect = 7e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 379 RAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYET 438
+ V +T + V GL TT +D+K+YF FG++ + D T +GFGFV F +
Sbjct: 103 KMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 162
Query: 439 QVKECHSNIRQIDD 452
K C + +I++
Sbjct: 163 VEKVCEIHFHEINN 176
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 56.2 bits (134), Expect = 7e-08
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 384 TSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKEC 443
+S + + GL W+T+ L++YFS FGEI V +D T S+GFGFV F + K
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 444 HSNIRQIDDGV---TVQFLTLKQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGHCREVID 500
++D V F Q T R+KK+FVG + + ++Q+F +V D
Sbjct: 76 GQPHHELDSKTIDPKVAFPRRAQPKMVT-RTKKIFVGGLSANTVVEDVKQYFEQFGKVED 134
Query: 501 VFI-----SKPFRDFAFLTLQ 516
+ + R F F+T +
Sbjct: 135 AMLMFDKTTNRHRGFGFVTFE 155
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 379 RAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYET 438
+ V +T + V GL T +D+K+YF FG++ + D T +GFGFV F +
Sbjct: 100 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDV 159
Query: 439 QVKECHSNIRQIDD 452
K C + +I++
Sbjct: 160 VEKVCEIHFHEINN 173
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 55.1 bits (131), Expect = 2e-07
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 391 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKECHSNIRQI 450
GL W+T+ L++YFS FGEI V +D T S+GFGFV F + K ++
Sbjct: 27 GLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHEL 86
Query: 451 DDGV---TVQFLTLKQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGHCREVIDVFI---- 503
D V F Q T R+KK+FVG + + ++Q+F +V D +
Sbjct: 87 DSKTIDPKVAFPRRAQPKMVT-RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDK 145
Query: 504 -SKPFRDFAFLTLQ 516
+ R F F+T +
Sbjct: 146 TTNRHRGFGFVTFE 159
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 379 RAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYET 438
+ V +T + V GL T +D+K+YF FG++ + D T +GFGFV F +
Sbjct: 104 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDV 163
Query: 439 QVKECHSNIRQIDD 452
K C + +I++
Sbjct: 164 VEKVCEIHFHEINN 177
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 387 LAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHF 433
L V GL W TT++ L+ YFS +GE++ + KD T S+GFGFV F
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
Score = 39.7 bits (91), Expect = 0.007
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 357 TFTKDNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQV 416
T K+ ++K ++D S K++ + V G+P E +L+EYF FG + V +
Sbjct: 95 TRPKEGWQKGPRSDNS----------KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVM 144
Query: 417 KKDVRTGYSKGFGFVHF 433
D +GFGF+ F
Sbjct: 145 IYDAEKQRPRGFGFITF 161
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 387 LAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHF 433
L V GL W TT++ L+ YFS +GE++ + KD T S+GFGFV F
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
Score = 39.7 bits (91), Expect = 0.007
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 357 TFTKDNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQV 416
T K+ ++K ++D S K++ + V G+P E +L+EYF FG + V +
Sbjct: 95 TRPKEGWQKGPRSDNS----------KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVM 144
Query: 417 KKDVRTGYSKGFGFVHF 433
D +GFGF+ F
Sbjct: 145 IYDAEKQRPRGFGFITF 161
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 51.6 bits (122), Expect = 2e-06
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 357 TFTKDNYRKREKTDTSLAIKVKRAVQKTS-----ALAVLGLPWKTTEQDLKEYFSTFGEI 411
++T + R+R ++ + ++ + + + + L V GL TTE+DL+E FS +G +
Sbjct: 86 SYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 145
Query: 412 LMVQVKKDVRTGYSKGFGFVHF 433
V V D RTG S+GF FV+F
Sbjct: 146 SGVNVVYDQRTGRSRGFAFVYF 167
>gi|239757884 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 50.4 bits (119), Expect = 4e-06
Identities = 31/167 (18%), Positives = 74/167 (44%), Gaps = 12/167 (7%)
Query: 157 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT--KVSVLTFTKVSVLTFTKVSVLTF 214
T T + + T+T + + T+T + + +T + + T+T + + +T + +T V + T+
Sbjct: 3 THTHMCIYTYTHICIYTYTHIHICIYTYMYIHTYTYMYIHIHVYTHIYTYVYTYVCIYTY 62
Query: 215 TK----VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTF 270
T V + + + + + +T + V T + V T + V +T + +
Sbjct: 63 TNICAYVHIRAYVHIHTCAYIHTYMCIYTHIYVCIHTYIYVYIHTYICV--YTHIHICVH 120
Query: 271 TKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLT 317
+ V T+ ++ +T + + T+ V T+ ++ T V + T
Sbjct: 121 IYIYVYTYVRI----YTYMCIHTYIYTYVCTYVRIYTYVCTDVYIYT 163
Score = 50.1 bits (118), Expect = 5e-06
Identities = 32/171 (18%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 173 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT--KVSVLTFTKVSVLTFTKVSVLTF 230
T T + + T+T + + T+T + + +T + + T+T + + +T + +T V + T+
Sbjct: 3 THTHMCIYTYTHICIYTYTHIHICIYTYMYIHTYTYMYIHIHVYTHIYTYVYTYVCIYTY 62
Query: 231 TKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVS 290
T + + V T + T+ + + T V + T+ V + T+ + +T +
Sbjct: 63 TNICAYVHIRAYVHIHTCAYIHTY--MCIYTHIYVCIHTYIYVYIHTY----ICVYTHIH 116
Query: 291 VLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTFTKVSVLT 341
+ + V T+ ++ +T + + T+ V T+ ++ T V + T
Sbjct: 117 ICVHIYIYVYTYVRI----YTYMCIHTYIYTYVCTYVRIYTYVCTDVYIYT 163
Score = 45.8 bits (107), Expect = 1e-04
Identities = 27/149 (18%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 197 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT--KVSVLTFTKVSVLTFTKVSVLTF 254
T T + + T+T + + T+T + + +T + + T+T + + +T + +T V + T+
Sbjct: 3 THTHMCIYTYTHICIYTYTHIHICIYTYMYIHTYTYMYIHIHVYTHIYTYVYTYVCIYTY 62
Query: 255 TKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVS 314
T + V + + + + + +T + V T + V T + V T +
Sbjct: 63 TNICAY----VHIRAYVHIHTCAYIHTYMCIYTHIYVCIHTYIYVYIHTYICVYTHIHIC 118
Query: 315 VLTFTKGSVLTFTKVSVLTFTKVSVLTFT 343
V + + +T V + T+ + +T
Sbjct: 119 VHIY----IYVYTYVRIYTYMCIHTYIYT 143
Score = 43.1 bits (100), Expect = 6e-04
Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 14/177 (7%)
Query: 153 VSVLTFTKVSVLTFTKVSVLTFT--KVSVLTFTKVSVLTFTKVSVLTFTK----VSVLTF 206
+ + T+T + + +T + + T+T + + +T + +T V + T+T V + +
Sbjct: 15 ICIYTYTHIHICIYTYMYIHTYTYMYIHIHVYTHIYTYVYTYVCIYTYTNICAYVHIRAY 74
Query: 207 TKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSV----LTFTKVSVLTF 262
+ + + +T + V T + V T + V T + V +T V + T+
Sbjct: 75 VHIHTCAYIHTYMCIYTHIYVCIHTYIYVYIHTYICVYTHIHICVHIYIYVYTYVRIYTY 134
Query: 263 TKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT 319
+ +T V T V + T+ V +T V + + V VS +T
Sbjct: 135 MCIHTYIYTYVC----TYVRIYTYVCTDVYIYTCVYIRMHIHICVYMHIHVSSFFYT 187
Score = 40.8 bits (94), Expect = 0.003
Identities = 23/130 (17%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 221 TFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFT--KVSVLTFTKVSVLTFTKVSVLTF 278
T T + + T+T + + T+T + + +T + + T+T + + +T + +T V + T+
Sbjct: 3 THTHMCIYTYTHICIYTYTHIHICIYTYMYIHTYTYMYIHIHVYTHIYTYVYTYVCIYTY 62
Query: 279 TK----VSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFTKVSVLTF 334
T V + + + + + +T + V T + V T + +T + +
Sbjct: 63 TNICAYVHIRAYVHIHTCAYIHTYMCIYTHIYVCIHTYIYVYIHT--YICVYTHIHICVH 120
Query: 335 TKVSVLTFTK 344
+ V T+ +
Sbjct: 121 IYIYVYTYVR 130
Score = 30.0 bits (66), Expect = 5.4
Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 293 TFTKVSVLTFTKVSVLTFTKVSVLTFTKGSVLTFT--KVSVLTFTKVSVLTFTKGSVLTF 350
T T + + T+T + + T+T + + +T + T+T + + +T + +T + T+
Sbjct: 3 THTHMCIYTYTHICIYTYTHIHICIYTYMYIHTYTYMYIHIHVYTHIYTYVYTYVCIYTY 62
Query: 351 T 351
T
Sbjct: 63 T 63
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 48.9 bits (115), Expect = 1e-05
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 382 QKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQV-KKDVRTGYSKGFGFVHFIKYETQV 440
Q TS + V +P++ ++++E FSTFGE+ V++ KK TG +GFGFV F+ +
Sbjct: 829 QTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAK 888
Query: 441 KE----CHSN--------IRQIDDGVTVQFLTLK 462
+ CHS + D VT+Q L K
Sbjct: 889 RAFNALCHSTHLYGRRLVLEWADSEVTLQALRRK 922
Score = 40.4 bits (93), Expect = 0.004
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 383 KTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKE 442
++ L V LP+ +TE+DL++ FS +G + + D T KGF F+ F+ E VK
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 443 CHSNIRQIDDGVTVQFL--TLKQTLNE 467
Q+ G + L T+K+ +E
Sbjct: 460 YSEVDGQVFQGRMLHVLPSTIKKEASE 486
Score = 35.4 bits (80), Expect = 0.13
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 387 LAVLGLPWKTTEQDLKEYFSTFGEILMVQV-KKDVRTG--YSKGFGFVHFIKYETQVKEC 443
L + L + TTE+ LKE FS G + + KK + G S GFGFV + K E K
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 444 HSNIRQIDDGVTVQFLTLKQTLNE--TLRSKKMFVGCCTEIMNSDKLQQFFGHCREVIDV 501
+ DG ++ ++ TL KK T + F H RE+ ++
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851
Query: 502 F 502
F
Sbjct: 852 F 852
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 48.9 bits (115), Expect = 1e-05
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 382 QKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQV-KKDVRTGYSKGFGFVHFIKYETQV 440
Q TS + V +P++ ++++E FSTFGE+ V++ KK TG +GFGFV F+ +
Sbjct: 829 QTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAK 888
Query: 441 KE----CHSN--------IRQIDDGVTVQFLTLK 462
+ CHS + D VT+Q L K
Sbjct: 889 RAFNALCHSTHLYGRRLVLEWADSEVTLQALRRK 922
Score = 40.4 bits (93), Expect = 0.004
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 383 KTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKE 442
++ L V LP+ +TE+DL++ FS +G + + D T KGF F+ F+ E VK
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 443 CHSNIRQIDDGVTVQFL--TLKQTLNE 467
Q+ G + L T+K+ +E
Sbjct: 460 YSEVDGQVFQGRMLHVLPSTIKKEASE 486
Score = 35.4 bits (80), Expect = 0.13
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 387 LAVLGLPWKTTEQDLKEYFSTFGEILMVQV-KKDVRTG--YSKGFGFVHFIKYETQVKEC 443
L + L + TTE+ LKE FS G + + KK + G S GFGFV + K E K
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 444 HSNIRQIDDGVTVQFLTLKQTLNE--TLRSKKMFVGCCTEIMNSDKLQQFFGHCREVIDV 501
+ DG ++ ++ TL KK T + F H RE+ ++
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851
Query: 502 F 502
F
Sbjct: 852 F 852
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 48.9 bits (115), Expect = 1e-05
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 382 QKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQV-KKDVRTGYSKGFGFVHFIKYETQV 440
Q TS + V +P++ ++++E FSTFGE+ V++ KK TG +GFGFV F+ +
Sbjct: 829 QTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAK 888
Query: 441 KE----CHSN--------IRQIDDGVTVQFLTLK 462
+ CHS + D VT+Q L K
Sbjct: 889 RAFNALCHSTHLYGRRLVLEWADSEVTLQALRRK 922
Score = 40.4 bits (93), Expect = 0.004
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 383 KTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKE 442
++ L V LP+ +TE+DL++ FS +G + + D T KGF F+ F+ E VK
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 443 CHSNIRQIDDGVTVQFL--TLKQTLNE 467
Q+ G + L T+K+ +E
Sbjct: 460 YSEVDGQVFQGRMLHVLPSTIKKEASE 486
Score = 35.4 bits (80), Expect = 0.13
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 387 LAVLGLPWKTTEQDLKEYFSTFGEILMVQV-KKDVRTG--YSKGFGFVHFIKYETQVKEC 443
L + L + TTE+ LKE FS G + + KK + G S GFGFV + K E K
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 444 HSNIRQIDDGVTVQFLTLKQTLNE--TLRSKKMFVGCCTEIMNSDKLQQFFGHCREVIDV 501
+ DG ++ ++ TL KK T + F H RE+ ++
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851
Query: 502 F 502
F
Sbjct: 852 F 852
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 48.5 bits (114), Expect = 1e-05
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 387 LAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKECHSN 446
L V LP T+++LK F + GEI ++ +D TG S G+GFV++I K+
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI----DPKDAEKA 96
Query: 447 IRQIDDGVTVQFLTLK----QTLNETLRSKKMFVGCCTEIMNSDKLQQFFGHCREVI 499
I + +G+ +Q T+K + + ++R ++V + M +L+Q F +I
Sbjct: 97 INTL-NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Score = 43.5 bits (101), Expect = 5e-04
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 359 TKDNYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKK 418
T + R + KT + A + + L V GLP T+++L++ FS +G I+ ++
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 158
Query: 419 DVRTGYSKGFGFVHFIK 435
D TG S+G GF+ F K
Sbjct: 159 DQVTGISRGVGFIRFDK 175
Score = 33.1 bits (74), Expect = 0.64
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 398 EQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYE 437
E L + F FG + V+V +D T KGFGFV Y+
Sbjct: 289 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 48.1 bits (113), Expect = 2e-05
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 362 NYRKREKTDTSLAIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVR 421
+++ R + + L RA++ T+ + V LP EQ L++ FS FG++L V+V +D
Sbjct: 172 HFKSRREREAELGA---RALEFTN-IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-N 226
Query: 422 TGYSKGFGFVHFIKY-ETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKKMFVGCCT 480
+G+S+ FGFV+F K+ E Q H N +++ + K+ + ++
Sbjct: 227 SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF------ 280
Query: 481 EIMNSDKLQQFFG 493
E M D+L+++ G
Sbjct: 281 EQMKQDRLRRYQG 293
Score = 33.9 bits (76), Expect = 0.38
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 401 LKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYE 437
L + FSTFG IL +V D S+GFGFVHF +E
Sbjct: 115 LYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHE 149
Score = 30.0 bits (66), Expect = 5.4
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 387 LAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVK 441
L V L + L++ FS +G I +V + G+SKGFGFV F E K
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATK 348
>gi|13654278 SRA stem-loop-interacting RNA-binding protein [Homo
sapiens]
Length = 109
Score = 47.8 bits (112), Expect = 3e-05
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 374 AIKVKRAVQKTSALAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHF 433
A ++R++ + A V +PW LKE+F+ FG + + D TG+ +G G+V F
Sbjct: 9 AAALRRSINQPVAF-VRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQF 67
Query: 434 IKYETQVKECHSNIRQIDDGVTVQFLTLKQTLNETLRSKK 473
E ++ I DGV VQ T + L +T +K
Sbjct: 68 -SSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEK 106
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 46.2 bits (108), Expect = 7e-05
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 387 LAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKECHSN 446
L + GL ++TT++ L+ +F +G + V +D T S+GFGFV + E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 447 IRQIDDGVTVQFLTL----KQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGHCR--EVID 500
++D V + Q L KK+FVG E L+ +F EVI+
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 501 VFI---SKPFRDFAFLT 514
+ S R FAF+T
Sbjct: 136 IMTDRGSGKKRGFAFVT 152
Score = 37.0 bits (84), Expect = 0.045
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 391 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYET 438
G+ T E L++YF +G+I ++++ D +G +GF FV F +++
Sbjct: 111 GIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 46.2 bits (108), Expect = 7e-05
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 387 LAVLGLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYETQVKECHSN 446
L + GL ++TT++ L+ +F +G + V +D T S+GFGFV + E ++
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 447 IRQIDDGVTVQFLTL----KQTLNETLRSKKMFVGCCTEIMNSDKLQQFFGHCR--EVID 500
++D V + Q L KK+FVG E L+ +F EVI+
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 501 VFI---SKPFRDFAFLT 514
+ S R FAF+T
Sbjct: 136 IMTDRGSGKKRGFAFVT 152
Score = 37.0 bits (84), Expect = 0.045
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 391 GLPWKTTEQDLKEYFSTFGEILMVQVKKDVRTGYSKGFGFVHFIKYET 438
G+ T E L++YF +G+I ++++ D +G +GF FV F +++
Sbjct: 111 GIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,875,697
Number of Sequences: 37866
Number of extensions: 559801
Number of successful extensions: 2542
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1724
Number of HSP's gapped (non-prelim): 512
length of query: 528
length of database: 18,247,518
effective HSP length: 107
effective length of query: 421
effective length of database: 14,195,856
effective search space: 5976455376
effective search space used: 5976455376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.