Search of human proteins with 169165408

Search of human proteins with 169165408

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169165408 PREDICTED: hypothetical protein [Homo sapiens]
         (172 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169165408 PREDICTED: hypothetical protein [Homo sapiens]           370   e-103
gi|169165822 PREDICTED: hypothetical protein [Homo sapiens]           370   e-103
gi|169165004 PREDICTED: hypothetical protein [Homo sapiens]           370   e-103
gi|209413756 synapsin III isoform IIIg [Homo sapiens]                  35   0.042
gi|209413752 synapsin III isoform IIIa [Homo sapiens]                  35   0.042
gi|57863269 ribosomal RNA processing 1 homolog B [Homo sapiens]        33   0.12 
gi|142976757 immediate early response 5 [Homo sapiens]                 33   0.16 
gi|71040090 regulatory factor X, 5 [Homo sapiens]                      32   0.21 
gi|4557843 regulatory factor X, 5 [Homo sapiens]                       32   0.21 
gi|150418009 transforming, acidic coiled-coil containing protein...    32   0.27 
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]                     32   0.35 
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]                     32   0.35 
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ...    32   0.35 
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]                     32   0.35 
gi|239755454 PREDICTED: hypothetical protein [Homo sapiens]            29   1.8  
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            29   1.8  
gi|239744258 PREDICTED: hypothetical protein LOC100128703 [Homo ...    29   1.8  
gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens]         29   1.8  
gi|4503969 growth differentiation factor 5 preproprotein [Homo s...    29   2.3  
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    29   2.3  
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    29   2.3  
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    29   2.3  
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    29   2.3  
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]             28   3.0  
gi|38158011 cell death-inducing DFFA-like effector a isoform 2 [...    28   3.0  
gi|150170699 kinesin family member 26A [Homo sapiens]                  28   3.0  
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         28   3.0  
gi|239735603 POM121 membrane glycoprotein-like 12 [Homo sapiens]       28   3.9  
gi|118582275 superoxide dismutase 3, extracellular precursor [Ho...    28   3.9  
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]            28   3.9  

>gi|169165408 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 172

 Score =  370 bits (950), Expect = e-103
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MPGKHSSFVLKLTLHKSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGST 60
           MPGKHSSFVLKLTLHKSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGST
Sbjct: 1   MPGKHSSFVLKLTLHKSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGST 60

Query: 61  GPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGPSPGQCWRP 120
           GPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGPSPGQCWRP
Sbjct: 61  GPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGPSPGQCWRP 120

Query: 121 LIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFPPRRVLERRSPWRPGFP 172
           LIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFPPRRVLERRSPWRPGFP
Sbjct: 121 LIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFPPRRVLERRSPWRPGFP 172


>gi|169165822 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 172

 Score =  370 bits (950), Expect = e-103
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MPGKHSSFVLKLTLHKSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGST 60
           MPGKHSSFVLKLTLHKSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGST
Sbjct: 1   MPGKHSSFVLKLTLHKSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGST 60

Query: 61  GPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGPSPGQCWRP 120
           GPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGPSPGQCWRP
Sbjct: 61  GPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGPSPGQCWRP 120

Query: 121 LIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFPPRRVLERRSPWRPGFP 172
           LIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFPPRRVLERRSPWRPGFP
Sbjct: 121 LIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFPPRRVLERRSPWRPGFP 172


>gi|169165004 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 172

 Score =  370 bits (950), Expect = e-103
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MPGKHSSFVLKLTLHKSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGST 60
           MPGKHSSFVLKLTLHKSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGST
Sbjct: 1   MPGKHSSFVLKLTLHKSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGST 60

Query: 61  GPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGPSPGQCWRP 120
           GPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGPSPGQCWRP
Sbjct: 61  GPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGPSPGQCWRP 120

Query: 121 LIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFPPRRVLERRSPWRPGFP 172
           LIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFPPRRVLERRSPWRPGFP
Sbjct: 121 LIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFPPRRVLERRSPWRPGFP 172


>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
          Length = 579

 Score = 34.7 bits (78), Expect = 0.042
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 40  PGQGPQTSPLLRPRRRHPGSTGPRDRAAESAWKRRALKAKRLS--WFLKLFPTGGAGNNT 97
           PGQ      L +P+ R P   GPR   +    +  +   +RLS      L P  G+    
Sbjct: 419 PGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQ 478

Query: 98  GLWRRPQQEGEKSGPSPGQCWRPLIDLGSKVRP 130
                PQ     SG SP Q  +P   L S+ RP
Sbjct: 479 RSPGSPQLSRASSGSSPNQASKPGATLASQPRP 511


>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
          Length = 580

 Score = 34.7 bits (78), Expect = 0.042
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 40  PGQGPQTSPLLRPRRRHPGSTGPRDRAAESAWKRRALKAKRLS--WFLKLFPTGGAGNNT 97
           PGQ      L +P+ R P   GPR   +    +  +   +RLS      L P  G+    
Sbjct: 420 PGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQ 479

Query: 98  GLWRRPQQEGEKSGPSPGQCWRPLIDLGSKVRP 130
                PQ     SG SP Q  +P   L S+ RP
Sbjct: 480 RSPGSPQLSRASSGSSPNQASKPGATLASQPRP 512


>gi|57863269 ribosomal RNA processing 1 homolog B [Homo sapiens]
          Length = 758

 Score = 33.1 bits (74), Expect = 0.12
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 52  PRRRHPGSTGPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSG 111
           P   HP   GPR      A   + LK KR    L + P  G+G +T  W   QQEG  +G
Sbjct: 502 PSGSHP--QGPRGSPTGGA---QLLKRKRK---LGVVPVNGSGLSTPAWPPLQQEGPPTG 553

Query: 112 PSPG 115
           P+ G
Sbjct: 554 PAEG 557


>gi|142976757 immediate early response 5 [Homo sapiens]
          Length = 327

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 20/90 (22%)

Query: 44  PQTSPLLRPRRR--HPGSTGPRDRAAESAWKRRA----LKAKRLSWFLKLFPTGGAGNNT 97
           P ++PL +PRR    P S G  D A E      A    +     S  L+  P GG     
Sbjct: 234 PGSTPLKKPRRNLEQPPSGGEDDDAEEMETGNVANLISIFGSSFSGLLRKSPGGG----- 288

Query: 98  GLWRRPQQEGEKSGP---SPGQ--CWRPLI 122
               R ++EGE+SGP    PGQ  C +P++
Sbjct: 289 ----REEEEGEESGPEAAEPGQICCDKPVL 314


>gi|71040090 regulatory factor X, 5 [Homo sapiens]
          Length = 616

 Score = 32.3 bits (72), Expect = 0.21
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 51  RPRRRHPGSTGPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGE 108
           RPR++  GS        +SA    + ++ RL W  + + +GG GN+ G   RP   GE
Sbjct: 468 RPRKKSGGSGERNSTPLKSAAAMESAQSSRLPW--ETWGSGGEGNSAGGAERPGPMGE 523


>gi|4557843 regulatory factor X, 5 [Homo sapiens]
          Length = 616

 Score = 32.3 bits (72), Expect = 0.21
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 51  RPRRRHPGSTGPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGE 108
           RPR++  GS        +SA    + ++ RL W  + + +GG GN+ G   RP   GE
Sbjct: 468 RPRKKSGGSGERNSTPLKSAAAMESAQSSRLPW--ETWGSGGEGNSAGGAERPGPMGE 523


>gi|150418009 transforming, acidic coiled-coil containing protein 2
           isoform a [Homo sapiens]
          Length = 2948

 Score = 32.0 bits (71), Expect = 0.27
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 16  KSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGSTGPRDRAAESAWKRRA 75
           + HPSS +    F E      L  P   P+  P  +  RR P    P D AA       A
Sbjct: 104 REHPSSSMP---FAECPPEGCLASPAAAPEDGPQTQSPRREPAPNAPGDIAA-------A 153

Query: 76  LKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKS 110
             A+R S     +    A  + G  R+P++EG+KS
Sbjct: 154 FPAERDS--STPYQEIAAVPSAGRERQPKEEGQKS 186


>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
          Length = 402

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 104 QQEGEKSGPSPGQCWRPLIDLGSKVRPGHH----SCHFHSIRGTTSPPASVVAQSFPPRR 159
           Q E E++GP   QCW  + D G++  P  H    S  +  I G       V +   PPRR
Sbjct: 162 QPEAEETGPWD-QCWMFVFDFGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRR 220


>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
          Length = 402

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 104 QQEGEKSGPSPGQCWRPLIDLGSKVRPGHH----SCHFHSIRGTTSPPASVVAQSFPPRR 159
           Q E E++GP   QCW  + D G++  P  H    S  +  I G       V +   PPRR
Sbjct: 162 QPEAEETGPWD-QCWMFVFDFGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRR 220


>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
           sapiens]
          Length = 402

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 104 QQEGEKSGPSPGQCWRPLIDLGSKVRPGHH----SCHFHSIRGTTSPPASVVAQSFPPRR 159
           Q E E++GP   QCW  + D G++  P  H    S  +  I G       V +   PPRR
Sbjct: 162 QPEAEETGPWD-QCWMFVFDFGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRR 220


>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
          Length = 402

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 104 QQEGEKSGPSPGQCWRPLIDLGSKVRPGHH----SCHFHSIRGTTSPPASVVAQSFPPRR 159
           Q E E++GP   QCW  + D G++  P  H    S  +  I G       V +   PPRR
Sbjct: 162 QPEAEETGPWD-QCWMFVFDFGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRR 220


>gi|239755454 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 305

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 27/84 (32%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 98  GLWR---------RPQQEGEKSGP-SPGQCWRPLIDLGSKVRPGHH-SCHFHSIRGTTSP 146
           G+WR          P Q+GE   P   G  WRPL   GS   PG    C      G    
Sbjct: 163 GVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWR 222

Query: 147 PASVVAQSFPPRRVLERRSPWRPG 170
           P    A    P +  E   PWR G
Sbjct: 223 PLERRASVASPGQKGECGVPWREG 246



 Score = 28.1 bits (61), Expect = 3.9
 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 103 PQQEGEKSGP-SPGQCWRPLIDLGSKVRPGHH-SCHFHSIRGTTSPPASVVAQSFPPRRV 160
           P ++GE   P   G+ WRPL   GS   PG    C      G    P    A    P + 
Sbjct: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180

Query: 161 LERRSPWRPG 170
            E   PWR G
Sbjct: 181 GECGVPWREG 190


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 40/154 (25%), Positives = 55/154 (35%), Gaps = 16/154 (10%)

Query: 16  KSHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGSTGPRDRAAESAWKRRA 75
           K H    L    FP   G+V    P +G  T PL  P   HP     ++R   +   +  
Sbjct: 78  KYHAHGHLRAPVFPVAKGSV----PSEGRATPPLPHPGDHHPRHR--KNRGPSAGTSQLG 131

Query: 76  LKAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGPSPGQCWRPLIDLGSKVRPGHHSC 135
            K +  S FL+    G       L  RP    ++ G       RP + LG+K  P     
Sbjct: 132 KKTQCRSLFLR--TKGLCALLLELPPRPPPNLQEGG-QRAIFQRPPVYLGNKPTPPRQEG 188

Query: 136 HFHS-------IRGTTSPPASVVAQSFPPRRVLE 162
            F         +   T+ PA     + PP RV E
Sbjct: 189 SFGGRPKSQPPLPQETAAPAPQPGPTAPPARVRE 222


>gi|239744258 PREDICTED: hypothetical protein LOC100128703 [Homo
           sapiens]
          Length = 389

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 27/84 (32%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 98  GLWR---------RPQQEGEKSGP-SPGQCWRPLIDLGSKVRPGHH-SCHFHSIRGTTSP 146
           G+WR          P Q+GE   P   G  WRPL   GS   PG    C      G    
Sbjct: 163 GVWRPLERRASVASPGQKGECGVPWREGGVWRPLERRGSVASPGEKGECGVPWREGRVWR 222

Query: 147 PASVVAQSFPPRRVLERRSPWRPG 170
           P    A    P +  E   PWR G
Sbjct: 223 PLERRASVASPGQKGECGVPWREG 246



 Score = 28.1 bits (61), Expect = 3.9
 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 103 PQQEGEKSGP-SPGQCWRPLIDLGSKVRPGHH-SCHFHSIRGTTSPPASVVAQSFPPRRV 160
           P ++GE   P   G+ WRPL   GS   PG    C      G    P    A    P + 
Sbjct: 121 PGEKGECGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQK 180

Query: 161 LERRSPWRPG 170
            E   PWR G
Sbjct: 181 GECGVPWREG 190


>gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens]
          Length = 485

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 41  GQGPQTSPLLRPRRRHPGST----------GPRDRAAESAWKRRALKAKRLSWFLKLFPT 90
           G GP   P   P RR    T           P  R  +S W R   + +R +W   L+P 
Sbjct: 411 GLGP---PAAAPARRRIPRTPALCTPLALPAPTTRRRQSPWTR--FQWRRRAWAAPLWPP 465

Query: 91  GGAGNNTGLWR 101
            GAG ++  WR
Sbjct: 466 RGAGADSPRWR 476


>gi|4503969 growth differentiation factor 5 preproprotein [Homo
           sapiens]
          Length = 501

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 91  GGAGNNTGLWRRPQQEGEKSGPSPGQCWRPLIDLGSKVRPGHHSCHFHSIRGTTSPPASV 150
           GG G   GL +  + E +K  P PG         G + +PGH      +   T +P   +
Sbjct: 78  GGTGQTGGLTQPKKDEPKKLPPRPG---------GPEPKPGHPPQTRQATARTVTPKGQL 128

Query: 151 VAQSFPPR 158
                PP+
Sbjct: 129 PGGKAPPK 136


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 28/142 (19%)

Query: 40  PGQGPQTSPLLRPRRRHPGSTGPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGL 99
           PG GPQ  P L+  +  PG+ GP   A      R  L            P  G     G 
Sbjct: 616 PGYGPQGEPGLQGTQGVPGAPGPPGEAG----PRGELSVST--------PVPGPPGPPGP 663

Query: 100 WRRPQQEGEKSGP-SPGQCWRPLIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFP-- 156
              P  +G    P S G+C  P +  G    PG          G   PP     Q FP  
Sbjct: 664 PGHPGPQGPPGIPGSLGKCGDPGLP-GPDGEPGIPGI------GFPGPPGPKGDQGFPGT 716

Query: 157 ------PRRVLERRSPWRPGFP 172
                 P ++ E   P +PG P
Sbjct: 717 KGSLGCPGKMGEPGLPGKPGLP 738


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 28/142 (19%)

Query: 40  PGQGPQTSPLLRPRRRHPGSTGPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGL 99
           PG GPQ  P L+  +  PG+ GP   A      R  L            P  G     G 
Sbjct: 616 PGYGPQGEPGLQGTQGVPGAPGPPGEAG----PRGELSVST--------PVPGPPGPPGP 663

Query: 100 WRRPQQEGEKSGP-SPGQCWRPLIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFP-- 156
              P  +G    P S G+C  P +  G    PG          G   PP     Q FP  
Sbjct: 664 PGHPGPQGPPGIPGSLGKCGDPGLP-GPDGEPGIPGI------GFPGPPGPKGDQGFPGT 716

Query: 157 ------PRRVLERRSPWRPGFP 172
                 P ++ E   P +PG P
Sbjct: 717 KGSLGCPGKMGEPGLPGKPGLP 738


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1637

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 28/142 (19%)

Query: 40  PGQGPQTSPLLRPRRRHPGSTGPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGL 99
           PG GPQ  P L+  +  PG+ GP   A      R  L            P  G     G 
Sbjct: 616 PGYGPQGEPGLQGTQGVPGAPGPPGEAG----PRGELSVST--------PVPGPPGPPGP 663

Query: 100 WRRPQQEGEKSGP-SPGQCWRPLIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFP-- 156
              P  +G    P S G+C  P +  G    PG          G   PP     Q FP  
Sbjct: 664 PGHPGPQGPPGIPGSLGKCGDPGLP-GPDGEPGIPGI------GFPGPPGPKGDQGFPGT 716

Query: 157 ------PRRVLERRSPWRPGFP 172
                 P ++ E   P +PG P
Sbjct: 717 KGSLGCPGKMGEPGLPGKPGLP 738


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1670

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 28/142 (19%)

Query: 40  PGQGPQTSPLLRPRRRHPGSTGPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGL 99
           PG GPQ  P L+  +  PG+ GP   A      R  L            P  G     G 
Sbjct: 616 PGYGPQGEPGLQGTQGVPGAPGPPGEAG----PRGELSVST--------PVPGPPGPPGP 663

Query: 100 WRRPQQEGEKSGP-SPGQCWRPLIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFP-- 156
              P  +G    P S G+C  P +  G    PG          G   PP     Q FP  
Sbjct: 664 PGHPGPQGPPGIPGSLGKCGDPGLP-GPDGEPGIPGI------GFPGPPGPKGDQGFPGT 716

Query: 157 ------PRRVLERRSPWRPGFP 172
                 P ++ E   P +PG P
Sbjct: 717 KGSLGCPGKMGEPGLPGKPGLP 738


>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
          Length = 1970

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 89   PTGGAGNNTGLWR-RPQQEGEKSGPSPGQ--CWRPLIDLGSKVRPGHHSCHFHSIRGTTS 145
            P+ G+G   G     P    + SG SPG    W P    GS   PG  S +  S  G  S
Sbjct: 1533 PSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTP--GSPGSPGPSSPYIPSPGGAMS 1590

Query: 146  PPASVVAQSFPPR 158
            P  S  + ++ PR
Sbjct: 1591 PSYSPTSPAYEPR 1603


>gi|38158011 cell death-inducing DFFA-like effector a isoform 2
           [Homo sapiens]
          Length = 253

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 17/54 (31%)

Query: 90  TGGAGNNTGLWRRPQQEGEKSGPS--------------PGQCWRPLIDLGSKVR 129
           +GG GN+ G W R   EG + GPS              P +  RPL  +GS+ +
Sbjct: 7   SGGPGNHNGSWAR---EGPRLGPSWKRGLWSPRGGPNRPAEPSRPLTFMGSQTK 57


>gi|150170699 kinesin family member 26A [Homo sapiens]
          Length = 1882

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 44  PQTSPLLRPRRRHPGSTGPRDRAAESAWKRRALKAKRLSWFLKLFPTGGAGNNTGLWRRP 103
           P   P++    RH  S GPRD           L+ +         P+GG G   G    P
Sbjct: 812 PDFVPIIPALSRHRPSKGPRDADHFRCSTFAELQERLECMDGNEGPSGGPGGTDGAQASP 871

Query: 104 QQEGEKSGPSPGQCWRPLIDLGS 126
            + G K  PSP +   P   +G+
Sbjct: 872 ARGGRK--PSPPEAASPRKAVGT 892


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 39/146 (26%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 17  SHPSSLLETFFFPEGDGTVTLIHPGQGPQTSPLLRPRRRHPGSTGPRDRAAESAWKRRAL 76
           SH SSL  +   P    TV  +  G+GPQT    RPR     +  P  +        + +
Sbjct: 354 SHSSSLRPSQRRPRRPPTVFRLLEGRGPQTPRRSRPR-----APAPVPQPFSLPEPSQPI 408

Query: 77  KAKRLSWFLKLFPTGGAGNNTGLWRRPQQEGEKSGP------SPGQCWRPLIDLGSKVRP 130
               LS  L   PT G  ++ G +     +     P      SP Q   P+        P
Sbjct: 409 LPSVLS--LLGLPTPGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPI----QPSLP 462

Query: 131 GHHSCHFHSIRGTTSPPASVVAQSFP 156
           G  S    S+ G  +PPA+  A   P
Sbjct: 463 GTTSGSLSSVPGAPAPPAASKAPVVP 488


>gi|239735603 POM121 membrane glycoprotein-like 12 [Homo sapiens]
          Length = 296

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 35/148 (23%)

Query: 42  QGPQTSPLLRPRRRHPGS--TGPRDRAAESAWKRRALKAKRLSWF-----------LKLF 88
           QGP    L  P  R P +  T P  +  +S W  R+L    + +F           +++ 
Sbjct: 24  QGPDA--LAAPMSRSPSTPQTTPSPQGRQSPWPLRSLTQSHIQYFQWGRPVPSTHLIEVR 81

Query: 89  PTGGAGNNTGL----WRRPQQEGEKS-GPSPGQCWRPLIDLGSKVRPGHHSCHFHSIRGT 143
           PT        +    WRRP   GE + G      W   +  G         C   +   T
Sbjct: 82  PTQDPAKPQRVVSEGWRRPALPGETALGRDLSCAWEGCMKGG--------LCRAWNPGRT 133

Query: 144 TSPPASVVAQSFPPRRVLERRSPWR-PG 170
            SP    +A   PP R   + SPWR PG
Sbjct: 134 WSPVTIGIA---PPER---QESPWRSPG 155


>gi|118582275 superoxide dismutase 3, extracellular precursor [Homo
           sapiens]
          Length = 240

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 19  PSSLLETFFFPEG-----DGTVTLIHPGQ-----------GPQTSPLLRPRRRHPGSTGP 62
           P + L+ FF  EG     + +   IH  Q           GP  +PL  P  +HPG  G 
Sbjct: 89  PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGN 148

Query: 63  RDRAAESAWKRRALKAKRLS 82
                 S W+ RA  A  L+
Sbjct: 149 FAVRDGSLWRYRAGLAASLA 168


>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 336

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 109 KSGPSPGQCWRPLIDLGSKVRPGHHSCHFHSIRGTTSPPASVVAQSFPPRRVLERRSPW 167
           K+GPSP     P      ++  G  S   H  R   SPPA  V    PP R     +PW
Sbjct: 69  KAGPSPS----PAAPTRPRLLHGRRSAG-HVARADVSPPAGPVPAPTPP-RARNAETPW 121


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,496,286
Number of Sequences: 37866
Number of extensions: 524860
Number of successful extensions: 1662
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1626
Number of HSP's gapped (non-prelim): 87
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.