Guide to the Human Genome
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Name: RFX5 Sequence: fasta or formatted (616aa) NCBI GI: 71040090
Description:

regulatory factor X, 5

Referenced in:

HLA and Related Proteins

Other entries for this name:
alt mRNA [616aa] regulatory factor X, 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         64           3
 C cysteine            1.1          7           2
 D aspartate           3.9         24           1
 E glutamate           7.6         47           2
 F phenylalanine       1.0          6           1
 G glycine            10.2         63           2
 H histidine           1.8         11           1
 I isoleucine          3.4         21           2
 K lysine              7.3         45           2
 L leucine             8.6         53           3
 M methionine          1.3          8           1
 N asparagine          2.4         15           2
 P proline            10.6         65           2
 Q glutamine           3.7         23           2
 R arginine            6.8         42           2
 S serine              8.6         53           2
 T threonine           4.2         26           2
 V valine              4.7         29           2
 W tryptophan          0.6          4           1
 Y tyrosine            1.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   regulatory factor X, 5 
RFX5                  1.000   regulatory factor X, 5 
RFX7                  0.167   regulatory factor X domain containing 2 
RFX4                  0.035   regulatory factor X4 isoform b 
RFX4                  0.034   regulatory factor X4 isoform c 
RFX2                  0.032   regulatory factor X2 isoform b 
RFX2                  0.032   regulatory factor X2 isoform a 
RFX3                  0.031   regulatory factor X3 isoform a 
RFX3                  0.031   regulatory factor X3 isoform b 
RFX1                  0.029   regulatory factor X1 
RFX6                  0.022   regulatory factor X, 6 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
CDKN1C                0.021   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.021   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.021   cyclin-dependent kinase inhibitor 1C isoform a 
BCL9L                 0.020   B-cell CLL/lymphoma 9-like 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.020   PREDICTED: hypothetical protein LOC80164 
SFPQ                  0.020   splicing factor proline/glutamine rich (polypyrimidin...
CASKIN1               0.019   CASK interacting protein 1 
ARID2                 0.019   AT rich interactive domain 2 (ARID, RFX-like) 
NOLC1                 0.018   nucleolar and coiled-body phosphoprotein 1 
IRF2BP2               0.018   interferon regulatory factor 2 binding protein 2 is...
SPEG                  0.018   SPEG complex locus 
NRG2                  0.017   neuregulin 2 isoform 2 
NRG2                  0.017   neuregulin 2 isoform 4 
NRG2                  0.017   neuregulin 2 isoform 3 
NRG2                  0.017   neuregulin 2 isoform 1 
LOC100292934          0.017   PREDICTED: hypothetical protein 
YLPM1                 0.017   YLP motif containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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