Guide to the Human Genome
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Name: SOD3 Sequence: fasta or formatted (240aa) NCBI GI: 118582275
Description:

superoxide dismutase 3, extracellular precursor

Referenced in:

Superoxide Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         33           2
 C cysteine            3.3          8           2
 D aspartate           5.8         14           3
 E glutamate           6.2         15           1
 F phenylalanine       2.9          7           2
 G glycine             9.6         23           2
 H histidine           3.8          9           1
 I isoleucine          1.7          4           1
 K lysine              2.1          5           2
 L leucine             8.3         20           3
 M methionine          1.2          3           1
 N asparagine          2.9          7           1
 P proline             5.4         13           1
 Q glutamine           4.6         11           1
 R arginine            8.3         20           3
 S serine              7.1         17           3
 T threonine           2.5          6           1
 V valine              7.1         17           3
 W tryptophan          2.1          5           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   superoxide dismutase 3, extracellular precursor [Ho... 
SOD1                  0.169   superoxide dismutase 1, soluble 
CCS                   0.131   copper chaperone for superoxide dismutase 
RPGR                  0.013   retinitis pigmentosa GTPase regulator isoform C [Hom...
MAGEC1                0.011   melanoma antigen family C, 1 
SHARPIN               0.011   shank-interacting protein-like 1 
VHL                   0.008   von Hippel-Lindau tumor suppressor isoform 2 
FKBP15                0.008   FK506 binding protein 15, 133kDa 
LOC100129194          0.006   PREDICTED: hypothetical protein 
LOC100291076          0.006   PREDICTED: hypothetical protein XP_002347846 
LOC100129194          0.006   PREDICTED: hypothetical protein 
LOC100129194          0.006   PREDICTED: hypothetical protein 
R3HDM1                0.006   R3H domain containing 1 
INO80B                0.006   high mobility group AT-hook 1-like 4 
CXorf57               0.006   hypothetical protein LOC55086 
ASCL5                 0.006   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 0.006   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
LOC100287104          0.006   PREDICTED: hypothetical protein XP_002343630 
ASCL5                 0.006   PREDICTED: achaete-scute complex homolog 5 
ABCF3                 0.006   ATP-binding cassette, sub-family F (GCN20), member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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