Guide to the Human Genome
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Name: LOC100129194 Sequence: fasta or formatted (172aa) NCBI GI: 169165408
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {172aa} PREDICTED: hypothetical protein
alt mRNA {172aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          8           2
 C cysteine            1.2          2           1
 D aspartate           1.7          3           1
 E glutamate           3.5          6           1
 F phenylalanine       5.2          9           3
 G glycine            10.5         18           2
 H histidine           5.2          9           2
 I isoleucine          1.7          3           1
 K lysine              5.2          9           1
 L leucine             9.3         16           2
 M methionine          0.6          1           1
 N asparagine          1.2          2           2
 P proline            12.8         22           2
 Q glutamine           3.5          6           2
 R arginine           11.0         19           3
 S serine             10.5         18           2
 T threonine           5.8         10           2
 V valine              3.5          6           2
 W tryptophan          2.9          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129194          1.000   PREDICTED: hypothetical protein 
LOC100129194          1.000   PREDICTED: hypothetical protein 
SYN3                  0.029   synapsin III isoform IIIg 
SYN3                  0.029   synapsin III isoform IIIa 
RRP1B                 0.023   ribosomal RNA processing 1 homolog B 
IER5                  0.023   immediate early response 5 
RFX5                  0.020   regulatory factor X, 5 
RFX5                  0.020   regulatory factor X, 5 
TACC2                 0.020   transforming, acidic coiled-coil containing protein...
LOC100128260          0.020   PREDICTED: hCG_1742852 
LOC100128260          0.020   PREDICTED: hCG_1742852 
LOC100288773          0.020   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.020   PREDICTED: hCG_1742852 
LOC100128703          0.012   PREDICTED: hypothetical protein 
LOC100127891          0.012   PREDICTED: hypothetical protein 
LOC100128703          0.012   PREDICTED: hypothetical protein LOC100128703 
ZDHHC1                0.012   zinc finger, DHHC-type containing 1 
GDF5                  0.012   growth differentiation factor 5 preproprotein 
COL4A3                0.012   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.012   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.012   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.012   alpha 3 type IV collagen isoform 1 precursor 
POLR2A                0.009   DNA-directed RNA polymerase II A 
CIDEA                 0.009   cell death-inducing DFFA-like effector a isoform 2 [...
KIF26A                0.009   kinesin family member 26A 
MBD6                  0.009   methyl-CpG binding domain protein 6 
POM121L12             0.009   POM121 membrane glycoprotein-like 12 
SOD3                  0.009   superoxide dismutase 3, extracellular precursor [Ho...
LOC100292745          0.009   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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