Guide to the Human Genome
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Name: FLJ34208 Sequence: fasta or formatted (297aa) NCBI GI: 169165128
Description:

PREDICTED: hypothetical protein LOC401106

Not currently referenced in the text

Other entries for this name:
alt mRNA {297aa} PREDICTED: hypothetical protein LOC401106
alt mRNA {297aa} PREDICTED: hypothetical protein LOC401106
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.1         42           2
 C cysteine            1.7          5           1
 D aspartate           3.7         11           1
 E glutamate           2.4          7           1
 F phenylalanine       3.0          9           1
 G glycine             8.1         24           3
 H histidine           1.7          5           1
 I isoleucine          1.3          4           1
 K lysine              3.4         10           2
 L leucine             8.8         26           2
 M methionine          1.0          3           1
 N asparagine          0.7          2           1
 P proline            16.2         48           3
 Q glutamine           5.7         17           1
 R arginine           12.8         38           2
 S serine              6.1         18           2
 T threonine           5.1         15           2
 V valine              1.3          4           1
 W tryptophan          1.3          4           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC401106 
FLJ34208              1.000   PREDICTED: hypothetical protein LOC401106 
FLJ34208              1.000   PREDICTED: hypothetical protein LOC401106 
LOC100290367          0.035   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.035   PREDICTED: hypothetical protein XP_002343287 
MICAL1                0.032   microtubule associated monoxygenase, calponin and L...
MICAL1                0.032   microtubule associated monoxygenase, calponin and L...
SYN1                  0.032   synapsin I isoform Ia 
SYN1                  0.032   synapsin I isoform Ib 
SAMD1                 0.032   sterile alpha motif domain containing 1 
RIN3                  0.030   Ras and Rab interactor 3 
KIAA1522              0.030   hypothetical protein LOC57648 
LOC388279             0.030   PREDICTED: hypothetical protein 
RAPH1                 0.029   Ras association and pleckstrin homology domains 1 is...
LOC100292058          0.029   PREDICTED: hypothetical protein XP_002344766 
LOC100287499          0.029   PREDICTED: hypothetical protein 
LOC100287499          0.029   PREDICTED: hypothetical protein XP_002343643 
LOC390595             0.027   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.027   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.027   PREDICTED: hypothetical protein 
C17orf96              0.027   hypothetical protein LOC100170841 
BAHD1                 0.027   bromo adjacent homology domain containing 1 
PRR12                 0.027   proline rich 12 
CNOT3                 0.025   CCR4-NOT transcription complex, subunit 3 
ARHGAP17              0.025   nadrin isoform 1 
ARHGAP17              0.025   nadrin isoform 2 
LOC283999             0.025   hypothetical protein LOC283999 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
ANKRD33B              0.025   PREDICTED: ankyrin repeat domain 33B 
LRRC38                0.025   PREDICTED: leucine rich repeat containing 38 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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