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Search of human proteins with 169163761
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo sap... 346 6e-96
gi|169164282 PREDICTED: hypothetical protein [Homo sapiens] 68 3e-12
gi|239747895 PREDICTED: hypothetical protein [Homo sapiens] 68 3e-12
gi|239741776 PREDICTED: hypothetical protein [Homo sapiens] 68 3e-12
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 39 0.002
gi|208431817 protein kinase-like protein SgK493 [Homo sapiens] 37 0.006
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 36 0.013
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 36 0.013
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 36 0.013
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 36 0.013
gi|239755342 PREDICTED: hypothetical protein [Homo sapiens] 36 0.017
gi|239749829 PREDICTED: hypothetical protein XP_002347170 [Homo ... 36 0.017
gi|239744119 PREDICTED: hypothetical protein XP_002343063 [Homo ... 36 0.017
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 36 0.017
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 35 0.038
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 35 0.038
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens] 35 0.038
gi|7657345 mitochondrial carrier homolog 1 [Homo sapiens] 35 0.038
gi|239754052 PREDICTED: hypothetical protein [Homo sapiens] 34 0.050
gi|38045919 huntingtin interacting protein 1 [Homo sapiens] 34 0.050
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 34 0.050
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 34 0.050
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 34 0.050
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 34 0.050
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 34 0.050
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 34 0.050
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 34 0.050
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 34 0.050
>gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 166
Score = 346 bits (887), Expect = 6e-96
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MLLQPADEKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGAR 60
MLLQPADEKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGAR
Sbjct: 1 MLLQPADEKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGAR 60
Query: 61 PAAGKGRRAVSAGARGVLWLPKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALR 120
PAAGKGRRAVSAGARGVLWLPKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALR
Sbjct: 61 PAAGKGRRAVSAGARGVLWLPKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALR 120
Query: 121 LPQPPPPQPNLLSARASGAGRARAPQHSFLNTQNICTKNNGAVKTK 166
LPQPPPPQPNLLSARASGAGRARAPQHSFLNTQNICTKNNGAVKTK
Sbjct: 121 LPQPPPPQPNLLSARASGAGRARAPQHSFLNTQNICTKNNGAVKTK 166
>gi|169164282 PREDICTED: hypothetical protein [Homo sapiens]
Length = 78
Score = 68.2 bits (165), Expect = 3e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MLLQPADEKGERKGGRRALCAPARAGGGARLE 32
MLLQPADEKGERKGGRRALCAPARAGGGARLE
Sbjct: 1 MLLQPADEKGERKGGRRALCAPARAGGGARLE 32
>gi|239747895 PREDICTED: hypothetical protein [Homo sapiens]
Length = 78
Score = 68.2 bits (165), Expect = 3e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MLLQPADEKGERKGGRRALCAPARAGGGARLE 32
MLLQPADEKGERKGGRRALCAPARAGGGARLE
Sbjct: 1 MLLQPADEKGERKGGRRALCAPARAGGGARLE 32
>gi|239741776 PREDICTED: hypothetical protein [Homo sapiens]
Length = 78
Score = 68.2 bits (165), Expect = 3e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MLLQPADEKGERKGGRRALCAPARAGGGARLE 32
MLLQPADEKGERKGGRRALCAPARAGGGARLE
Sbjct: 1 MLLQPADEKGERKGGRRALCAPARAGGGARLE 32
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 38.9 bits (89), Expect = 0.002
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 29 ARLEKPGWRAAGLATDWQPPPPPGRVAEH--GARPAAGKGRRAVSA----GARGVLWLPK 82
+RL+ P L +PPPPP A H GAR AAG R ++ +RG +
Sbjct: 53 SRLKLPADPPRALPGSPEPPPPPPPAAPHVLGARVAAGPTHRLSASHSRVSSRGPVGTKP 112
Query: 83 ARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQPPPPQPNLLSARA 136
R + R R R SP R R +S + PPPP P+ +R+
Sbjct: 113 KR---PGQGRRAGARMRSAAPASPRARAARAISNQS----SPPPPPPSRARSRS 159
Score = 27.3 bits (59), Expect = 6.1
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 104 RSPNRRCI--RDLSRAALRLPQPPPPQPNLLSARASGAGRARAPQHSFLNTQNICTKNNG 161
RSP+ R D RA P+PPPP P + GA A P H L+ + + G
Sbjct: 49 RSPSSRLKLPADPPRALPGSPEPPPPPP-PAAPHVLGARVAAGPTHR-LSASHSRVSSRG 106
Query: 162 AVKTK 166
V TK
Sbjct: 107 PVGTK 111
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 38.9 bits (89), Expect = 0.002
Identities = 43/133 (32%), Positives = 47/133 (35%), Gaps = 27/133 (20%)
Query: 21 APARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGAR-----PAAGKGRRAVSAGAR 75
AP R G E+PG R PPPP R R PAAG R +A
Sbjct: 44 APPRPG-----EEPGNR--------HPPPPAARTHPGSCRARCPSPAAGGLRGPWTAA-- 88
Query: 76 GVLWLPKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQPPPPQPNLLSAR 135
P + R R+R R P R ALRLP PPPP P R
Sbjct: 89 -----PGRQRADEGAAAARPERQRVWARRLPGSAAAPAPGRDALRLPPPPPPPPE--RPR 141
Query: 136 ASGAGRARAPQHS 148
AG A P S
Sbjct: 142 LPPAGLAGGPADS 154
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 38.9 bits (89), Expect = 0.002
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 29 ARLEKPGWRAAGLATDWQPPPPPGRVAEH--GARPAAGKGRRAVSA----GARGVLWLPK 82
+RL+ P L +PPPPP A H GAR AAG R ++ +RG +
Sbjct: 53 SRLKLPADPPRALPGSPEPPPPPPPAAPHVLGARVAAGPTHRLSASHSRVSSRGPVGTKP 112
Query: 83 ARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQPPPPQPNLLSARA 136
R + R R R SP R R +S + PPPP P+ +R+
Sbjct: 113 KR---PGQGRRAGARMRSAAPASPRARAARAISNQS----SPPPPPPSRARSRS 159
Score = 27.3 bits (59), Expect = 6.1
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 104 RSPNRRCI--RDLSRAALRLPQPPPPQPNLLSARASGAGRARAPQHSFLNTQNICTKNNG 161
RSP+ R D RA P+PPPP P + GA A P H L+ + + G
Sbjct: 49 RSPSSRLKLPADPPRALPGSPEPPPPPP-PAAPHVLGARVAAGPTHR-LSASHSRVSSRG 106
Query: 162 AVKTK 166
V TK
Sbjct: 107 PVGTK 111
>gi|208431817 protein kinase-like protein SgK493 [Homo sapiens]
Length = 493
Score = 37.4 bits (85), Expect = 0.006
Identities = 38/103 (36%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 48 PPPPGRVAEHGARPAAGKGRRAVSAGARGVLWLPKARAVPSFRTRLRDLRE--RDG---G 102
PP PG+ E PA G GRR G RG L AR + R R +++ R G G
Sbjct: 32 PPRPGQSPEPS--PAPGPGRR----GGRGEL----ARQI---RARYEEVQRYSRGGPGPG 78
Query: 103 WRSPNRRCIRDLSRAALRLPQPPPPQPNLLSARASGAGRARAP 145
P RR + DL+ LP+P PP LS A G A P
Sbjct: 79 AGRPERRRLMDLAPGGPGLPRPRPPWARPLSDGAPGWPPAPGP 121
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 36.2 bits (82), Expect = 0.013
Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 9 KGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKGRR 68
+G R GR P RAG L P RA LA +PP PP H AR +AG G R
Sbjct: 136 RGGRGAGRARKPGPDRAGAERSL--PAHRAPRLA---RPPVPPS--VAHVARASAGLGAR 188
Query: 69 AVSAGARG 76
V G G
Sbjct: 189 PVPGGPAG 196
Score = 28.9 bits (63), Expect = 2.1
Identities = 44/147 (29%), Positives = 50/147 (34%), Gaps = 24/147 (16%)
Query: 19 LCAPARAGGGARLEKPGWRAAGLATDWQPPPPP-----------GRVAEHGARPAAGKGR 67
LC A R A T +PP P G A+H A A + +
Sbjct: 44 LCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGGGGGCGAQHWA--AGRRAQ 101
Query: 68 RAVSAGARGVLWLPKARAVPSFRTRLRDLRERDG-GWRSPNRRCIRDLSRA--------- 117
R AGA + RA PS R R R R G G R R RA
Sbjct: 102 REQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPAH 161
Query: 118 -ALRLPQPPPPQPNLLSARASGAGRAR 143
A RL +PP P ARAS AR
Sbjct: 162 RAPRLARPPVPPSVAHVARASAGLGAR 188
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 36.2 bits (82), Expect = 0.013
Identities = 48/152 (31%), Positives = 55/152 (36%), Gaps = 24/152 (15%)
Query: 18 ALCAPARAGGGARLEKPGWRAAGLAT----DWQPPPPPGRVAEHGA---RPAAGKGRRAV 70
A A A G A L PG R G + P P PG G+ P + R
Sbjct: 64 AWAAGATGVGAALLALPGSRRLGRVPLTFREASPGPAPGAPRARGSCGREPGPRRRRAPS 123
Query: 71 SAGARGVLWLPKARAVPSFRTRLRDLRERDGGW--------RSPNRRCIRDLSRAALR-- 120
SAG R ARA P + L R G P R C R R
Sbjct: 124 SAGKRPAA---AARAAPPRQRSLARCLPRSVGSCVRPSVGPSLPRRHCRRHCRCHCRRRP 180
Query: 121 LPQPPPPQPNLLSAR----ASGAGRARAPQHS 148
LP+PPP QP L SA A+ +RAP S
Sbjct: 181 LPKPPPLQPRLGSASPPRLAAPLAGSRAPSLS 212
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 36.2 bits (82), Expect = 0.013
Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 9 KGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKGRR 68
+G R GR P RAG L P RA LA +PP PP H AR +AG G R
Sbjct: 139 RGGRGAGRARKPGPDRAGAERSL--PAHRAPRLA---RPPVPPS--VAHVARASAGLGAR 191
Query: 69 AVSAGARG 76
V G G
Sbjct: 192 PVPGGPAG 199
Score = 28.5 bits (62), Expect = 2.8
Identities = 42/148 (28%), Positives = 46/148 (31%), Gaps = 23/148 (15%)
Query: 19 LCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKG------------ 66
LC A R A T +PP P G G G
Sbjct: 44 LCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRA 103
Query: 67 RRAVSAGARGVLWLPKARAVPSFRTRLRDLRERDG-GWRSPNRRCIRDLSRA-------- 117
+R AGA + RA PS R R R R G G R R RA
Sbjct: 104 QREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPA 163
Query: 118 --ALRLPQPPPPQPNLLSARASGAGRAR 143
A RL +PP P ARAS AR
Sbjct: 164 HRAPRLARPPVPPSVAHVARASAGLGAR 191
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 36.2 bits (82), Expect = 0.013
Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 9 KGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKGRR 68
+G R GR P RAG L P RA LA +PP PP H AR +AG G R
Sbjct: 139 RGGRGAGRARKPGPDRAGAERSL--PAHRAPRLA---RPPVPPS--VAHVARASAGLGAR 191
Query: 69 AVSAGARG 76
V G G
Sbjct: 192 PVPGGPAG 199
Score = 28.5 bits (62), Expect = 2.8
Identities = 42/148 (28%), Positives = 46/148 (31%), Gaps = 23/148 (15%)
Query: 19 LCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKG------------ 66
LC A R A T +PP P G G G
Sbjct: 44 LCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGGGGGGCGAQHWAAGRRA 103
Query: 67 RRAVSAGARGVLWLPKARAVPSFRTRLRDLRERDG-GWRSPNRRCIRDLSRA-------- 117
+R AGA + RA PS R R R R G G R R RA
Sbjct: 104 QREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDRAGAERSLPA 163
Query: 118 --ALRLPQPPPPQPNLLSARASGAGRAR 143
A RL +PP P ARAS AR
Sbjct: 164 HRAPRLARPPVPPSVAHVARASAGLGAR 191
>gi|239755342 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 35.8 bits (81), Expect = 0.017
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 27/110 (24%)
Query: 26 GGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKGRRAVSAGARGVLWL----- 80
G G PGW+ GLAT AGKG +A + G LW
Sbjct: 116 GAGVGAPPPGWKGLGLAT------------------GAGKGLGGSTAASGGALWARGGDC 157
Query: 81 -PKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQPPPPQP 129
P ++ + TR WR ++ C R L PP P+P
Sbjct: 158 RPSPLSMAAGSTRASSWVLESARWRCCSKSC---TPRPETSLSCPPSPEP 204
>gi|239749829 PREDICTED: hypothetical protein XP_002347170 [Homo
sapiens]
Length = 220
Score = 35.8 bits (81), Expect = 0.017
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 27/110 (24%)
Query: 26 GGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKGRRAVSAGARGVLWL----- 80
G G PGW+ GLAT AGKG +A + G LW
Sbjct: 116 GAGVGAPPPGWKGLGLAT------------------GAGKGLGGSTAASGGALWARGGDC 157
Query: 81 -PKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQPPPPQP 129
P ++ + TR WR ++ C R L PP P+P
Sbjct: 158 RPSPLSMAAGSTRASSWVLESARWRCCSKSC---TPRPETSLSCPPSPEP 204
>gi|239744119 PREDICTED: hypothetical protein XP_002343063 [Homo
sapiens]
Length = 220
Score = 35.8 bits (81), Expect = 0.017
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 27/110 (24%)
Query: 26 GGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKGRRAVSAGARGVLWL----- 80
G G PGW+ GLAT AGKG +A + G LW
Sbjct: 116 GAGVGAPPPGWKGLGLAT------------------GAGKGLGGSTAASGGALWARGGDC 157
Query: 81 -PKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQPPPPQP 129
P ++ + TR WR ++ C R L PP P+P
Sbjct: 158 RPSPLSMAAGSTRASSWVLESARWRCCSKSC---TPRPETSLSCPPSPEP 204
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 35.8 bits (81), Expect = 0.017
Identities = 50/140 (35%), Positives = 56/140 (40%), Gaps = 32/140 (22%)
Query: 16 RRALCAPARAGGGARLEKPGWRAAGLATDWQPPPP----PGRVAEHGARPAAGKGRRAVS 71
R LCAP A G A+ P AAG P PP P R A G PA G+ RA +
Sbjct: 40 RPPLCAPRPAPGRAQSPVP---AAGAV----PSPPAAAHPARPALRGETPAPGRRGRATT 92
Query: 72 AGARGVLWLPKARAVPSFRTRL--RDLRERDGGWRSPNRRCIRDLSRAALRLPQPPP-PQ 128
G PS R L R LR G P + + SR RLP PP +
Sbjct: 93 RG----------EVQPSVRPPLSHRPLRGGGMGRGRPGKGPPPNPSR---RLPPAPPGGR 139
Query: 129 PNLLSA-----RASGAGRAR 143
LSA A GAGR R
Sbjct: 140 RTWLSALATGPAAGGAGRRR 159
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 34.7 bits (78), Expect = 0.038
Identities = 42/133 (31%), Positives = 50/133 (37%), Gaps = 22/133 (16%)
Query: 10 GERKGGRRALCAPAR----AGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGK 65
G R+ G RA+ A R AGGG R + G G A + P R A AA +
Sbjct: 855 GRRRVGARAVAAAGRQGAGAGGGGRRVRHG-HGHGAAVLQRAPCRQQRHLAPAAAAAAAQ 913
Query: 66 GRRAVSAGARGVLWLPKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQPP 125
G RA A+G P A+ PS R R P R R RAA+ L
Sbjct: 914 GVRA----AQGRAHRPGAQGAPSHRHR-------------PGARGRRSRRRAAVALAGGA 956
Query: 126 PPQPNLLSARASG 138
P L R G
Sbjct: 957 HPARAALGRRRGG 969
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 34.7 bits (78), Expect = 0.038
Identities = 42/133 (31%), Positives = 50/133 (37%), Gaps = 22/133 (16%)
Query: 10 GERKGGRRALCAPAR----AGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGK 65
G R+ G RA+ A R AGGG R + G G A + P R A AA +
Sbjct: 855 GRRRVGARAVAAAGRQGAGAGGGGRRVRHG-HGHGAAVLQRAPCRQQRHLAPAAAAAAAQ 913
Query: 66 GRRAVSAGARGVLWLPKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQPP 125
G RA A+G P A+ PS R R P R R RAA+ L
Sbjct: 914 GVRA----AQGRAHRPGAQGAPSHRHR-------------PGARGRRSRRRAAVALAGGA 956
Query: 126 PPQPNLLSARASG 138
P L R G
Sbjct: 957 HPARAALGRRRGG 969
>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
Length = 503
Score = 34.7 bits (78), Expect = 0.038
Identities = 50/158 (31%), Positives = 63/158 (39%), Gaps = 31/158 (19%)
Query: 4 QPADEKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRV-AEHGA--- 59
+P E+ R+ R AP RA A A+ A W P G A GA
Sbjct: 55 RPRGEERLREEARLREDAPLRARPAA--------ASPRAEPWLSQPASGSAYATPGAYGD 106
Query: 60 -RPAAGKGRRAVSAGARGVLWLPKARAVPSFRTRLRDLRERDGGWRSPNR---------R 109
RP+A A G+RG+ + P A R +R E D R+P+R R
Sbjct: 107 IRPSA-----ASWVGSRGLAY-PARPAQLRRRASVRGSSEEDEDARTPDRATQGPGLAAR 160
Query: 110 CIRDLSRAALRLPQP---PPPQPNLLSARASGAGRARA 144
S A RLP P P+P L + RA AG ARA
Sbjct: 161 RWWAASPAPARLPSSLLGPDPRPGLRATRAGPAGAARA 198
>gi|7657345 mitochondrial carrier homolog 1 [Homo sapiens]
Length = 372
Score = 34.7 bits (78), Expect = 0.038
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 15 GRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKGRRAVSAGA 74
G A A A AG GAR G AAG+ + PPP R RPAA R + G+
Sbjct: 14 GGAAGMAGAGAGAGAR----GGAAAGVEARARDPPPAHRAHPRHPRPAAQPSARRMDGGS 69
Query: 75 RGV 77
G+
Sbjct: 70 GGL 72
>gi|239754052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 34.3 bits (77), Expect = 0.050
Identities = 43/153 (28%), Positives = 48/153 (31%), Gaps = 34/153 (22%)
Query: 9 KGERKGGRRALCAPARAGGGARLEKP---GWRAAGLATDWQPPPPPG------------- 52
+G +G C PAR GG R P WR G W P G
Sbjct: 105 RGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPG 164
Query: 53 ---------RVAEHGARPAAGKGRRAVSAG---------ARGVLWLPKARAVPSFRTRLR 94
R + G A G RR+VSAG AR P RA RT LR
Sbjct: 165 SRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLR 224
Query: 95 DLRERDGGWRSPNRRCIRDLSRAALRLPQPPPP 127
G R R + SR L P P
Sbjct: 225 RAPGAAGRARERRRSRANEWSRRLLSGELRPEP 257
>gi|38045919 huntingtin interacting protein 1 [Homo sapiens]
Length = 1037
Score = 34.3 bits (77), Expect = 0.050
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 114 LSRAALRLPQPPPPQPNLLSARASGAGRARAPQHSFLNTQNICTKNNGAVKTK 166
+ R A + Q P P P +LS R GAG A + SF TQ + N A+ T+
Sbjct: 1 MDRMASSMKQVPNPLPKVLSRRGVGAGLEAAERESFERTQTVSI--NKAINTQ 51
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 34.3 bits (77), Expect = 0.050
Identities = 29/82 (35%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 8 EKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAG--- 64
EKGE KG +P G PG GL PP PPG G + AG
Sbjct: 537 EKGE-KGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDG 595
Query: 65 -KGRRAVSA--GARGVLWLPKA 83
KG + G RG L LP A
Sbjct: 596 AKGEKGFQGEKGDRGPLGLPGA 617
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 34.3 bits (77), Expect = 0.050
Identities = 29/82 (35%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 8 EKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAG--- 64
EKGE KG +P G PG GL PP PPG G + AG
Sbjct: 475 EKGE-KGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDG 533
Query: 65 -KGRRAVSA--GARGVLWLPKA 83
KG + G RG L LP A
Sbjct: 534 AKGEKGFQGEKGDRGPLGLPGA 555
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 34.3 bits (77), Expect = 0.050
Identities = 29/82 (35%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 8 EKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAG--- 64
EKGE KG +P G PG GL PP PPG G + AG
Sbjct: 477 EKGE-KGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDG 535
Query: 65 -KGRRAVSA--GARGVLWLPKA 83
KG + G RG L LP A
Sbjct: 536 AKGEKGFQGEKGDRGPLGLPGA 557
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 34.3 bits (77), Expect = 0.050
Identities = 29/82 (35%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 8 EKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAG--- 64
EKGE KG +P G PG GL PP PPG G + AG
Sbjct: 480 EKGE-KGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDG 538
Query: 65 -KGRRAVSA--GARGVLWLPKA 83
KG + G RG L LP A
Sbjct: 539 AKGEKGFQGEKGDRGPLGLPGA 560
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 34.3 bits (77), Expect = 0.050
Identities = 29/82 (35%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 8 EKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAG--- 64
EKGE KG +P G PG GL PP PPG G + AG
Sbjct: 484 EKGE-KGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDG 542
Query: 65 -KGRRAVSA--GARGVLWLPKA 83
KG + G RG L LP A
Sbjct: 543 AKGEKGFQGEKGDRGPLGLPGA 564
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 34.3 bits (77), Expect = 0.050
Identities = 29/82 (35%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 8 EKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAG--- 64
EKGE KG +P G PG GL PP PPG G + AG
Sbjct: 496 EKGE-KGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDG 554
Query: 65 -KGRRAVSA--GARGVLWLPKA 83
KG + G RG L LP A
Sbjct: 555 AKGEKGFQGEKGDRGPLGLPGA 576
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 34.3 bits (77), Expect = 0.050
Identities = 29/82 (35%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 8 EKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAG--- 64
EKGE KG +P G PG GL PP PPG G + AG
Sbjct: 508 EKGE-KGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDG 566
Query: 65 -KGRRAVSA--GARGVLWLPKA 83
KG + G RG L LP A
Sbjct: 567 AKGEKGFQGEKGDRGPLGLPGA 588
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 34.3 bits (77), Expect = 0.050
Identities = 29/82 (35%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 8 EKGERKGGRRALCAPARAGGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAG--- 64
EKGE KG +P G PG GL PP PPG G + AG
Sbjct: 515 EKGE-KGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDG 573
Query: 65 -KGRRAVSA--GARGVLWLPKA 83
KG + G RG L LP A
Sbjct: 574 AKGEKGFQGEKGDRGPLGLPGA 595
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,278,176
Number of Sequences: 37866
Number of extensions: 562579
Number of successful extensions: 5538
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 388
Number of HSP's that attempted gapping in prelim test: 4938
Number of HSP's gapped (non-prelim): 965
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.