Guide to the Human Genome
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Name: LOC100292854 Sequence: fasta or formatted (220aa) NCBI GI: 239755342
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         27           3
 C cysteine            3.6          8           2
 D aspartate           1.8          4           1
 E glutamate           5.5         12           2
 F phenylalanine       0.5          1           1
 G glycine            19.1         42           3
 H histidine           0.0          0           0
 I isoleucine          0.5          1           1
 K lysine              4.5         10           2
 L leucine            10.0         22           2
 M methionine          2.3          5           1
 N asparagine          0.0          0           0
 P proline            10.5         23           3
 Q glutamine           0.0          0           0
 R arginine            7.7         17           1
 S serine              8.6         19           2
 T threonine           4.5         10           1
 V valine              5.5         12           3
 W tryptophan          2.7          6           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291403          1.000   PREDICTED: hypothetical protein XP_002347170 
LOC100288087          1.000   PREDICTED: hypothetical protein XP_002343063 
LTK                   0.044   leukocyte receptor tyrosine kinase isoform 1 precurs...
FOXD3                 0.037   forkhead box D3 
COL1A2                0.035   alpha 2 type I collagen 
HNRNPR                0.032   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.032   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.032   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.032   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
COL5A3                0.030   collagen, type V, alpha 3 preproprotein 
NOTCH3                0.030   Notch homolog 3 
ZSWIM6                0.028   zinc finger, SWIM-type containing 6 
ELN                   0.028   elastin isoform e precursor 
ELN                   0.028   elastin isoform c precursor 
ELN                   0.028   elastin isoform b precursor 
FLJ31945              0.028   PREDICTED: hypothetical protein 
COL15A1               0.025   alpha 1 type XV collagen precursor 
COL11A1               0.025   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.025   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.025   alpha 1 type XI collagen isoform A preproprotein [Ho...
ELN                   0.025   elastin isoform d precursor 
ELN                   0.025   elastin isoform a precursor 
COL4A2                0.025   alpha 2 type IV collagen preproprotein 
DACH1                 0.025   dachshund homolog 1 isoform b 
DACH1                 0.025   dachshund homolog 1 isoform a 
DACH1                 0.025   dachshund homolog 1 isoform c 
LOC100131320          0.025   PREDICTED: hypothetical protein isoform 1 
COL4A4                0.025   alpha 4 type IV collagen precursor 
ULK1                  0.023   Unc-51-like kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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