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Search of human proteins with 169163708
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 498 e-141
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 498 e-141
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 496 e-141
gi|110832843 TBP-associated factor 4 [Homo sapiens] 59 5e-09
gi|48762934 alpha 2 type I collagen [Homo sapiens] 56 3e-08
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 56 3e-08
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 55 4e-08
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 55 4e-08
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 55 4e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 55 5e-08
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 54 9e-08
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 54 2e-07
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 54 2e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 53 2e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 52 4e-07
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 52 4e-07
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 52 4e-07
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 52 6e-07
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 52 6e-07
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 52 6e-07
gi|156415990 Y box binding protein 2 [Homo sapiens] 51 8e-07
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 51 8e-07
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 51 1e-06
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 50 1e-06
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 50 2e-06
gi|33286436 gametogenetin [Homo sapiens] 50 2e-06
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 50 2e-06
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 50 2e-06
gi|169173306 PREDICTED: hypothetical protein [Homo sapiens] 49 4e-06
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 49 4e-06
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 498 bits (1283), Expect = e-141
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS
Sbjct: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
Query: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA
Sbjct: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
Query: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTT 180
PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTT
Sbjct: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTT 180
Query: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA
Sbjct: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 498 bits (1283), Expect = e-141
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS
Sbjct: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
Query: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA
Sbjct: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
Query: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTT 180
PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTT
Sbjct: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTT 180
Query: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA
Sbjct: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 496 bits (1276), Expect = e-141
Identities = 236/237 (99%), Positives = 236/237 (99%)
Query: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS
Sbjct: 1 MCKQNMSCVPLGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPS 60
Query: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA
Sbjct: 61 PAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA 120
Query: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTT 180
PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG SGWSHGHTARVGGTGDSSAGLTT
Sbjct: 121 PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTT 180
Query: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA
Sbjct: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 58.5 bits (140), Expect = 5e-09
Identities = 73/244 (29%), Positives = 91/244 (37%), Gaps = 54/244 (22%)
Query: 16 GTPLYPRARGPAI---ASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSP----------A 62
G+P GPA + G + P P GRAR G GP+ P P
Sbjct: 65 GSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGG------GPQRPGPPSPRRPLVPAG 118
Query: 63 PALPA-RARPPRENRKRA---VPARAA--RGPPKRPAG-GQTGGVEAASGEERSQPRRPR 115
PA PA + RPP E + VPA AA GP PAG + G A + P
Sbjct: 119 PAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP 178
Query: 116 RPPPAPRRPRPA-PGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDS 174
P P P +PA PG ++L +A LL H V +
Sbjct: 179 GPGPGPGPGKPAGPGAAQTLNGSAALLNSH-----------------HAAAPAVSLVNNG 221
Query: 175 SAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTY-SPRSDPRDPAAPRAGPEA 233
A L P + G + P + + PPAP SP + P PAAP A P
Sbjct: 222 PAALLPLPKPAAPGTV--------IQTPPFVGAAAPPAPAAPSPPAAPA-PAAPAAAPPP 272
Query: 234 PPPA 237
PPPA
Sbjct: 273 PPPA 276
Score = 37.4 bits (85), Expect = 0.011
Identities = 36/105 (34%), Positives = 38/105 (36%), Gaps = 30/105 (28%)
Query: 56 PRAPSP----APALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQP 111
P APSP APA PA A PP PA AR PP PAG
Sbjct: 252 PAAPSPPAAPAPAAPAAAPPPPP----PAPATLAR-PPGHPAGP---------------- 290
Query: 112 RRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG 156
P AP P PA + AAP GG +G G G
Sbjct: 291 -----PTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPG 330
Score = 35.4 bits (80), Expect = 0.043
Identities = 39/130 (30%), Positives = 46/130 (35%), Gaps = 24/130 (18%)
Query: 18 PLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRK 77
P A PA A+ P+P A P P PAPA ARPP
Sbjct: 242 PFVGAAAPPAPAAPSPPAAPAPAAPAA----------APPPPPPAPA--TLARPP--GHP 287
Query: 78 RAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR----RPPPAPRRPRPAPGRR-- 131
P A PP PA Q GG A+ P +P P PAPG +
Sbjct: 288 AGPPTAAPAVPP--PAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAE 345
Query: 132 --KSLYEAAP 139
K + +AAP
Sbjct: 346 SPKRVVQAAP 355
Score = 33.1 bits (74), Expect = 0.22
Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 24/127 (18%)
Query: 16 GTPLYPRARGPAI---------ASAGYSRPPSPV--GRARRRGTWLRVLRGPRAPSPAPA 64
G P P PA+ SAG + P+P G A G GP A + APA
Sbjct: 285 GHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQ-----PGPGAAAAAPA 339
Query: 65 LPARARPPRENRKRAVPAR---AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAP 121
+A P+ + A PA AA GP A G + + P PPPAP
Sbjct: 340 PGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPT-----MQGALPSPAAVPPPAP 394
Query: 122 RRPRPAP 128
P P
Sbjct: 395 GTPTGLP 401
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 55.8 bits (133), Expect = 3e-08
Identities = 72/232 (31%), Positives = 84/232 (36%), Gaps = 16/232 (6%)
Query: 13 GQWGTPLYPRARGPA--IASAGYSRPPSPVGRARRRGTWLRV-LRGPRAPSPAPALPARA 69
G+ G P A GP I S G S PP P G G V GP PS P A
Sbjct: 589 GERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAA 648
Query: 70 RPPRENRKRAVPA-RAARGPPKRP-AGGQTGGVEAA--SGEERSQPRRPRRPPPAPRRPR 125
P ++ P R G P R A G G V A +G + P P PR
Sbjct: 649 GIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPR 708
Query: 126 PAPGRRKSLYEAAP---LLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
+PG R + A P G+ G +G+RG G G VG TG A P
Sbjct: 709 GSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKG-PKGENGVVGPTGPVGAAGPAGP 767
Query: 183 GSSRG--GFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPE 232
G G G P + R+ PP P S S P P P AG E
Sbjct: 768 NGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGP--SGISGPPGPPGP-AGKE 816
Score = 44.3 bits (103), Expect = 9e-05
Identities = 71/267 (26%), Positives = 88/267 (32%), Gaps = 47/267 (17%)
Query: 11 LGGQWGTPLYPRARGPA-----IASAGYSRPPSPVGRARRRGTWLRV-LRGPRAPSPAPA 64
L G G P P GPA + G P P+G A RG + GP+ P+ P
Sbjct: 446 LMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPG 505
Query: 65 ----------LPARARP-PRENRKRAVP--------ARAARGPPKRPAGGQTGGVEAASG 105
AR P P N P + +GPP P G +G
Sbjct: 506 KNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAG 565
Query: 106 E-----ERSQPRRPRRPPPA-PRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSG 159
E ER P PA PR R PG + P+ +R G G G++G G
Sbjct: 566 EVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPG 625
Query: 160 WSHGHTARVGGTGDS----SAGLTTFPG----SSRGGFSGREEEPRRE--RRQPSLQRST 209
G G +G S G PG G G P R+ R P +
Sbjct: 626 -VVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAP 684
Query: 210 PPAPTYSPRSD-----PRDPAAPRAGP 231
PA R + P PA PR P
Sbjct: 685 GPAGATGDRGEAGAAGPAGPAGPRGSP 711
Score = 38.5 bits (88), Expect = 0.005
Identities = 60/230 (26%), Positives = 74/230 (32%), Gaps = 33/230 (14%)
Query: 13 GQWGTPLYPRARGP-----AIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA 67
G G P +P A GP A+ +AG + P P G G L GP P P
Sbjct: 250 GSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPG-----LSGPVGPPGNPGANG 304
Query: 68 RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPA 127
K A G P P G A+G + R P P +
Sbjct: 305 LT-----GAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGA---RGLVGEPGPAGSKGE 356
Query: 128 PGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGS-SR 186
G + A P G G+RG G +G S G G G S G PG+ R
Sbjct: 357 SGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAG-SAGPPGPPGLRG--SPGSRGLPGADGR 413
Query: 187 GGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAP-RAGPEAPP 235
G G P + ++ PA P D P P GP P
Sbjct: 414 AGVMG----------PPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLP 453
Score = 38.1 bits (87), Expect = 0.007
Identities = 57/216 (26%), Positives = 71/216 (32%), Gaps = 24/216 (11%)
Query: 30 SAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPP 89
SAG PP P G +RG G P P L R P A GPP
Sbjct: 365 SAGPQGPPGPSGEEGKRGP--NGEAGSAGPPGPPGL--RGSPGSRGLPGADGRAGVMGPP 420
Query: 90 KRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAA-------PLLT 142
GV +G+ R P PR PG ++ A P +
Sbjct: 421 GSRGASGPAGVRGPNGD------AGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGID 474
Query: 143 REKG--GRSGRRGDRGGSGW--SHGHTARVGGTGDSS-AGLTTFPGS-SRGGFSGREEEP 196
G G +G RG+ G G+ G T G GD AGL G+ G +G + P
Sbjct: 475 GRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPP 534
Query: 197 RRERRQPSLQRSTPPAPT-YSPRSDPRDPAAPRAGP 231
+ Q PP P + P PA P
Sbjct: 535 GPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKP 570
Score = 31.2 bits (69), Expect = 0.82
Identities = 47/169 (27%), Positives = 58/169 (34%), Gaps = 14/169 (8%)
Query: 23 ARGPA--IASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA----RARPPRENR 76
ARGPA AG P GR RG + +G R P LP R +
Sbjct: 131 ARGPAGPPGKAGEDGHPGKPGRPGERG--VVGPQGARGFPGTPGLPGFKGIRGHNGLDGL 188
Query: 77 KRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYE 136
K A +G P P T G A G R R P P R + G +
Sbjct: 189 KGQPGAPGVKGEPGAPGENGTPGQTGARG---LPGERGRVGAPGPAGARGSDGSVGPVGP 245
Query: 137 AAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSS 185
A P+ + G G G +G G + G+ G G G PG S
Sbjct: 246 AGPIGSAGPPGFPGAPGPKGEIG-AVGNAGPAGPAG--PRGEVGLPGLS 291
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 55.8 bits (133), Expect = 3e-08
Identities = 47/143 (32%), Positives = 59/143 (41%), Gaps = 30/143 (20%)
Query: 23 ARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRA--------PSPAPALPARARPPRE 74
AR P A+A + PPSP G A+ GPRA P PAPA P PP
Sbjct: 146 ARAPRAAAAAATAPPSP-GPAQP---------GPRAQRAAPLAAPPPAPAAPPAVAPPAG 195
Query: 75 NRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSL 134
R+ PA AAR PP P + P + ++PPP +P P G ++
Sbjct: 196 PRRAPPPAVAAREPPLPPP------------PQPPAPPQQQQPPPPQPQPPPEGGAVRAG 243
Query: 135 YEAAPLLTREKGGRSGRRGDRGG 157
A P+ RE G G GG
Sbjct: 244 GAARPVSLREVVRYLGGSGGAGG 266
Score = 38.5 bits (88), Expect = 0.005
Identities = 48/171 (28%), Positives = 58/171 (33%), Gaps = 64/171 (37%)
Query: 67 ARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
AR +PPR P RA RG P A+ + P P PPP P
Sbjct: 97 ARVQPPRRGATPPAPPRAPRGAP-------------AAAAAAAPPPTPAPPPP------P 137
Query: 127 APGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSR 186
AP + AAP AR ++A PG ++
Sbjct: 138 AP-----VAAAAP--------------------------ARAPRAAAAAATAPPSPGPAQ 166
Query: 187 GGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPPA 237
G PR +R P + PPAP P P PA PR APPPA
Sbjct: 167 PG-------PRAQRAAP--LAAPPPAPAAPPAVAP--PAGPR---RAPPPA 203
Score = 37.7 bits (86), Expect = 0.009
Identities = 37/116 (31%), Positives = 42/116 (36%), Gaps = 27/116 (23%)
Query: 18 PLYPRA-RGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENR 76
P PRA RG A+A + PP+P AP P PA A A P R R
Sbjct: 109 PAPPRAPRGAPAAAAAAAPPPTP------------------APPPPPAPVAAAAPARAPR 150
Query: 77 KRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPP----PAPRRPRPAP 128
A A A P P Q G + + P P PP PA R P P
Sbjct: 151 AAAAAATA----PPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPP 202
Score = 37.4 bits (85), Expect = 0.011
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 56 PRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR 115
PRAP APA A A PP P A PP A A+ + P P
Sbjct: 112 PRAPRGAPAAAAAAAPP--------PTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPG 163
Query: 116 RPPPAPRRPRPAPGRRKSLYEAAP 139
P PR R AP AAP
Sbjct: 164 PAQPGPRAQRAAPLAAPPPAPAAP 187
Score = 33.9 bits (76), Expect = 0.13
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDP--RDPAAPRAGPEAPPP 236
R + G R QP + +TPPAP +PR P AAP P PPP
Sbjct: 84 RVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPP 136
Score = 32.7 bits (73), Expect = 0.28
Identities = 30/97 (30%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 36 PPSPVGRARRRGTWLRVLRGPRAPS--PAPALPARARPPRENRKRAVPARAARGPPKRPA 93
PP+P R P P+ P PA A A P R R A A A P P
Sbjct: 108 PPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATA----PPSPG 163
Query: 94 GGQTGGVEAASGEERSQPRRPRRPPPA--PRRPRPAP 128
Q G + + P P PP P PR AP
Sbjct: 164 PAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAP 200
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 55.5 bits (132), Expect = 4e-08
Identities = 77/253 (30%), Positives = 94/253 (37%), Gaps = 53/253 (20%)
Query: 18 PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72
P +PR R P S + PP P + G+ LR P AP P P ARA P
Sbjct: 85 PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128
A P AAR P R A G +G G ++ R R +PPP RR R AP
Sbjct: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
Query: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
R R PL +R G R G GG G + + + DS + F
Sbjct: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
Query: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215
G+ R G GR PRR R+P S+P P +
Sbjct: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
Query: 216 SPRSDPRDPAAPR 228
PRS PR PA R
Sbjct: 314 FPRSVPRFPAGFR 326
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 55.5 bits (132), Expect = 4e-08
Identities = 77/253 (30%), Positives = 94/253 (37%), Gaps = 53/253 (20%)
Query: 18 PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72
P +PR R P S + PP P + G+ LR P AP P P ARA P
Sbjct: 85 PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128
A P AAR P R A G +G G ++ R R +PPP RR R AP
Sbjct: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
Query: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
R R PL +R G R G GG G + + + DS + F
Sbjct: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
Query: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215
G+ R G GR PRR R+P S+P P +
Sbjct: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
Query: 216 SPRSDPRDPAAPR 228
PRS PR PA R
Sbjct: 314 FPRSVPRFPAGFR 326
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 55.5 bits (132), Expect = 4e-08
Identities = 77/253 (30%), Positives = 94/253 (37%), Gaps = 53/253 (20%)
Query: 18 PLYPRARGPAIASAGYSR----PPSPVGRARRRGTWLRVLRGPRAPSPAPALP-ARARPP 72
P +PR R P S + PP P + G+ LR P AP P P ARA P
Sbjct: 85 PPHPRTRSPPGRSGSGTTFSAVPPRP--SQHQSGSRLR----PAAPGPRPGCSSARASPA 138
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR---RPPPAP-RRPRPAP 128
A P AAR P R A G +G G ++ R R +PPP RR R AP
Sbjct: 139 P-----AAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAP 193
Query: 129 GR--RKSLYEAAPLLTREKGGRSGRR----GDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
R R PL +R G R G GG G + + + DS + F
Sbjct: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFG 253
Query: 183 GSSR-GGFSGREEE----------------PRRERRQPSLQR-----STPPAPT-----Y 215
G+ R G GR PRR R+P S+P P +
Sbjct: 254 GALRVRGCGGRRRSNGQGTQPGCRLLSPAPPRRRYRKPLTLSFGGGVSSPTHPVVAPRRH 313
Query: 216 SPRSDPRDPAAPR 228
PRS PR PA R
Sbjct: 314 FPRSVPRFPAGFR 326
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 55.1 bits (131), Expect = 5e-08
Identities = 64/234 (27%), Positives = 85/234 (36%), Gaps = 55/234 (23%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPA-LPARARPPRE 74
G P P +G A + PPSP G GP PSP A +P A PP
Sbjct: 1069 GGPATPSLKGAPTPPA--ATPPSPKG-------------GPATPSPKGAPMPPAATPPSP 1113
Query: 75 NRKRAVPARAARGPPKRPAG---GQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRR 131
A P +G P PA GG+ A+ + P P PP+P+ P +
Sbjct: 1114 KGGLATPPH--KGAPTTPAATPPSPKGGL--ATPPPKGAPTTPAATPPSPKGGLATPPPK 1169
Query: 132 KSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSG 191
+ A KGG + T G + A P S +GG +
Sbjct: 1170 GAPTTPAATPPSPKGGLA---------------TPSPKGAPTTPAAT---PPSPKGGLAT 1211
Query: 192 REEEPRRERRQPSLQRSTPPAP-----TYSPRSDPRDPAA----PRAGPEAPPP 236
+ P+ +TPP+P T SP+ P PAA P+ GP PPP
Sbjct: 1212 PSP-----KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPP 1260
Score = 44.7 bits (104), Expect = 7e-05
Identities = 58/232 (25%), Positives = 76/232 (32%), Gaps = 49/232 (21%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSP--APALPARARPPR 73
G P P +G A + PPSP G GP PSP AP PA P
Sbjct: 975 GGPATPSPKGAPTPPA--ATPPSPKG-------------GPATPSPKGAPTPPAVTPPSP 1019
Query: 74 ENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKS 133
+ A P P G AA+ + P P P+P+ P + +
Sbjct: 1020 KGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGA 1079
Query: 134 LYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGRE 193
A KGG + T G A P S +GG +
Sbjct: 1080 PTPPAATPPSPKGGPA---------------TPSPKGAPMPPAAT---PPSPKGGLA--- 1118
Query: 194 EEPRRERRQPSLQRSTPPAP-----TYSPRSDPRDPAA----PRAGPEAPPP 236
+ P+ +TPP+P T P+ P PAA P+ G PPP
Sbjct: 1119 --TPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPP 1168
Score = 42.4 bits (98), Expect = 4e-04
Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 19/195 (9%)
Query: 56 PRAPSP--APALPARARPPRENRKRAVPA-RAARGPPKRPAGGQTGGVEAASGEERSQPR 112
P +PSP AP PA A PP A P+ + A PP GG A+ + P
Sbjct: 931 PASPSPKGAPTPPA-ATPPSPKGGPATPSPKWAPTPPAATPPSPKGG--PATPSPKGAPT 987
Query: 113 RPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTG 172
P PP+P+ P + + A KG + +G S G+
Sbjct: 988 PPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSP 1047
Query: 173 DSS---AGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAP-----TYSPRSDPRDP 224
++ G T P ++ G P + P+ +TPP+P T SP+ P P
Sbjct: 1048 AATPLPKGAPTTPAATLPSPKGGPATPSL-KGAPTPPAATPPSPKGGPATPSPKGAPMPP 1106
Query: 225 AA----PRAGPEAPP 235
AA P+ G PP
Sbjct: 1107 AATPPSPKGGLATPP 1121
Score = 41.2 bits (95), Expect = 8e-04
Identities = 61/228 (26%), Positives = 76/228 (33%), Gaps = 29/228 (12%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRA-PSP--APALPARARPP 72
G P P A P+ G PSP G +G A PSP AP PA P
Sbjct: 1193 GAPTTPAATPPS--PKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPS 1250
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRK 132
+ P + A PP GG+ + P + P P P G
Sbjct: 1251 PKGGPATPPPKGAPTPPAATPPSLKGGL-------ATPPHKGAPNPAVVTPPSPKGGPAT 1303
Query: 133 SLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPG---SSRGGF 189
S + AP T +G G+ G T S G T P SS+GG
Sbjct: 1304 SPPKGAP--TPPAATPPSPKGS-PGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGG- 1359
Query: 190 SGREEEPRRERRQPSLQRSTPPAPTYSPRSDP-RDPAAPRAGPEAPPP 236
S + TPPA T S + P P +P+ GP P P
Sbjct: 1360 ---------PTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSP 1398
Score = 35.8 bits (81), Expect = 0.033
Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 33/208 (15%)
Query: 55 GPRAPSP--APALPARARPPRENRKRAVP-----ARAARGPPKRPAG---GQTGGVEAAS 104
GP P+P APAL + P++ R P + + +G P PA GG A+
Sbjct: 899 GPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGG--PAT 956
Query: 105 GEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGH 164
+ P P PP+P+ P + + A KGG + +G
Sbjct: 957 PSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPA-TPSPKGAPT----P 1011
Query: 165 TARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQR---STPPAPTYSPRSDP 221
A + S T FP + + P+ L + +TP A SP+ P
Sbjct: 1012 PAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGP 1071
Query: 222 RDPA-------------APRAGPEAPPP 236
P+ +P+ GP P P
Sbjct: 1072 ATPSLKGAPTPPAATPPSPKGGPATPSP 1099
Score = 35.8 bits (81), Expect = 0.033
Identities = 52/233 (22%), Positives = 75/233 (32%), Gaps = 35/233 (15%)
Query: 11 LGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSP--APALPAR 68
L G TP + A PA+ + PPSP G GP P AP PA
Sbjct: 1274 LKGGLATPPHKGAPNPAVVT-----PPSPKG-------------GPATSPPKGAPTPPAA 1315
Query: 69 ARPPRENRKRAVPARAARGPPK--RPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
P + P + A PP P+ T + A + + P P + P
Sbjct: 1316 TPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSS------KEGP 1369
Query: 127 APGRRKSLYEAAPLLTREKGGRS----GRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFP 182
P ++ P +T R +GD + T + G T
Sbjct: 1370 TPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAAT-- 1427
Query: 183 GSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
S+G + P ++ P+ T S + DP PA P+ PP
Sbjct: 1428 -PSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPP 1479
Score = 30.4 bits (67), Expect = 1.4
Identities = 53/242 (21%), Positives = 77/242 (31%), Gaps = 34/242 (14%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN 75
G + P+ + P G + P +P+G L P +P A LP + + +
Sbjct: 798 GVSVSPQTKRPP-TKKGSAGPDTPIGN----------LSSPVSPVEASFLPENSLSFQGS 846
Query: 76 RKRAVPARAARGPPKRPAGGQT-GGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSL 134
+ PA P P G T V S + + P + P P P G
Sbjct: 847 KDS--PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPA 904
Query: 135 YEAAPLLTREKGGRSGRRGDRGGSGWS-----HGHTARVGGTGDSSAG---------LTT 180
+ AP L+ R G G T S G T
Sbjct: 905 PKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPT 964
Query: 181 FPGSSRGGFSGREEEPRRERRQPSLQRSTPPAP-----TYSPRSDPRDPAAPRAGPEAPP 235
P ++ G P + P+ +TPP+P T SP+ P PA P+ P
Sbjct: 965 PPAATPPSPKGGPATPS-PKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSP 1023
Query: 236 PA 237
A
Sbjct: 1024 AA 1025
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 54.3 bits (129), Expect = 9e-08
Identities = 74/244 (30%), Positives = 90/244 (36%), Gaps = 43/244 (17%)
Query: 18 PLYPRARGPAIASAGYSRPPS---PVGRARRRGTWLRVLRGPRAPSPAPALPARAR-PPR 73
P+ R RGP +G PP P+G RG L+ RG P P L R PP
Sbjct: 1972 PVPERRRGPK-GDSGEQGPPGKEGPIGFPGERG--LKGDRGDPGPQGPPGLALGERGPPG 2028
Query: 74 ENRKRAVPARAA-RGPPKRPAGGQTGGVEAASGEERSQPRRPRR----PPPAPRRPRPA- 127
+ P + G P R G G GE + R + PP P P P
Sbjct: 2029 PSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPG 2088
Query: 128 -PGRRKSLYEAAPLLTREKG--------------GRSGRRGDRGGSGWSHGHTARVGGTG 172
PG + S+ E P L+ E+G G G +GDRG G G G G
Sbjct: 2089 PPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIK-GDRGEPGPRG 2147
Query: 173 -DSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAP-RAG 230
D + GL PG G +G E +P LQ P DP P AP AG
Sbjct: 2148 QDGNPGL---PGER--GMAGPEGKP-------GLQGPRGPPGPVGGHGDPGPPGAPGLAG 2195
Query: 231 PEAP 234
P P
Sbjct: 2196 PAGP 2199
Score = 47.0 bits (110), Expect = 1e-05
Identities = 57/193 (29%), Positives = 67/193 (34%), Gaps = 38/193 (19%)
Query: 13 GQWGTPLYPRARGPAIASA-----GYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA 67
GQ G P P RG A G PP PVG G P AP L
Sbjct: 2147 GQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGG-----------HGDPGPPGAPGLAG 2195
Query: 68 RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRR---P 124
A P + + P GPP R G TG V PP P P
Sbjct: 2196 PAGPQGPSGLKGEPGET--GPPGRGLTGPTGAVGLPG-------------PPGPSGLVGP 2240
Query: 125 RPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSG--WSHGHTARVGGTGDSSAGLTTFP 182
+ +PG + E + G SG+ GDRG G S G VG G+ G T P
Sbjct: 2241 QGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGE--PGPTGAP 2298
Query: 183 GSSRGGFSGREEE 195
G + G G + E
Sbjct: 2299 GQAVVGLPGAKGE 2311
Score = 42.4 bits (98), Expect = 4e-04
Identities = 69/265 (26%), Positives = 87/265 (32%), Gaps = 64/265 (24%)
Query: 11 LGGQWGTPLYPRARGP--AIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPAR 68
L GQ G+P RGP AI G P P+G A +G RGP P+ + LP
Sbjct: 1457 LPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGE-----RGPPGPAGSRGLPGV 1511
Query: 69 ARPPRENRKRAVPARAAR----GPPKRPAG------------GQTGGVEAASGEERSQPR 112
A P P R G P RP G+ G V A + +
Sbjct: 1512 AGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQ 1571
Query: 113 RPRRPP----PAPRRPRPAPGRRKSLY------------------------EAAPLLTRE 144
R PP P P+ PG R + P+ R
Sbjct: 1572 GERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRG 1631
Query: 145 KGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRG--GFSGREEEPRRERRQ 202
+ G G +GD G G G + G GL PG RG G G + +P + R
Sbjct: 1632 RDGEVGEKGDEGPPG-DPGLPGKAG-----ERGLRGAPG-VRGPVGEKGDQGDPGEDGRN 1684
Query: 203 PSLQRSTPPAPTYSPRSDPRDPAAP 227
S S P R +P P P
Sbjct: 1685 GSPGSSGPK----GDRGEPGPPGPP 1705
Score = 36.6 bits (83), Expect = 0.019
Identities = 52/191 (27%), Positives = 63/191 (32%), Gaps = 47/191 (24%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGR-------ARRRGT-WLRVLRGPRAPSPAPA 64
G+ G P + GP G PP P GR AR +G R GPR P P
Sbjct: 1679 GEDGRNGSPGSSGPK-GDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPG 1737
Query: 65 LPARAR---------PPRENRKRAVPARAA----RGPPK---------RPAGGQTGGVEA 102
LP PP V A RGPP +P G
Sbjct: 1738 LPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNG 1797
Query: 103 ASGEERSQPR------RPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKG--------GR 148
A+G+ R R + P P P PG+ + P L + G GR
Sbjct: 1798 AAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGE--DGKPGLNGKNGEPGDPGEDGR 1855
Query: 149 SGRRGDRGGSG 159
G +GD G SG
Sbjct: 1856 KGEKGDSGASG 1866
Score = 36.2 bits (82), Expect = 0.025
Identities = 59/233 (25%), Positives = 73/233 (31%), Gaps = 25/233 (10%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPP 72
G+ G P P GP PP P G L +GP A P
Sbjct: 2073 GRDGPPGLPGTPGPP-------GPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQ 2125
Query: 73 RENRKRAVPA-RAARGPP-KRPAGGQTG--GVEAASGEERSQPRRPRRPPPAPRRPRPAP 128
R VP + RG P R G G G +G E + R PP P P
Sbjct: 2126 GPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDP 2185
Query: 129 GRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWS-HGHTARVGGTGDSSAGLTTFPGSSRG 187
G + A P + G G G+ G G G T VG G P S G
Sbjct: 2186 GPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPG 2245
Query: 188 -----GFSGREEEPRR--------ERRQPSLQRSTPPAPTYSPRSDPRDPAAP 227
G +G+ P R +R P + S P+ +P AP
Sbjct: 2246 LPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAP 2298
Score = 35.0 bits (79), Expect = 0.057
Identities = 54/188 (28%), Positives = 59/188 (31%), Gaps = 37/188 (19%)
Query: 53 LRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPR 112
LRG P P LP R P +GPP G A G
Sbjct: 1264 LRGQVGPPGDPGLPGRTGAP-----------GPQGPPGSATAKGERGFPGADG------- 1305
Query: 113 RPRRPPPAPRRPRP-APGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGT 171
RP P A P APG + S P G G RG RG G +GG
Sbjct: 1306 RPGSPGRAGNPGTPGAPGLKGSPGLPGPR------GDPGERGPRGPKGEPGAPGQVIGGE 1359
Query: 172 GDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSD-----PRDPAA 226
G G PG S G G PR P R P P + + D R P
Sbjct: 1360 GPGLPGRKGDPGPS--GPPG----PRGPLGDPG-PRGPPGLPGTAMKGDKGDRGERGPPG 1412
Query: 227 PRAGPEAP 234
P G AP
Sbjct: 1413 PGEGGIAP 1420
Score = 31.6 bits (70), Expect = 0.63
Identities = 53/225 (23%), Positives = 69/225 (30%), Gaps = 22/225 (9%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPP 72
G G P P A G + G + P +G+ G RG P +P PP
Sbjct: 2389 GDLGLPGLPGAPG-VVGFPGQTGPRGEMGQPGPSGE-----RGLAGPPGREGIPGPLGPP 2442
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRK 132
P + K G G GE + R PR PG R
Sbjct: 2443 GPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRG 2502
Query: 133 SLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGD----SSAGLTTFPG----S 184
E + G +G +GD+G S G G GD GL G +
Sbjct: 2503 ERGEKGDV------GSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDN 2556
Query: 185 SRGGFSGREEEP--RRERRQPSLQRSTPPAPTYSPRSDPRDPAAP 227
G G + EP + P L+ P P DP +P
Sbjct: 2557 GDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSP 2601
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 53.5 bits (127), Expect = 2e-07
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 23 ARGPA--IASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPAR----ARPPRENR 76
ARGPA +ASAG G R GTW G R ALP+R A P E
Sbjct: 53 ARGPAPLLASAG--------GGRARDGTW-----GVRTKGSGAALPSRPASRAAPRPEAS 99
Query: 77 KRAVPARAARGPPKRPAGGQTGGVEAASG-EERSQPRRPRRPPPAPRRPRPAPGRRKSLY 135
+P ARG P GG+ G A G +RS+ R R + +R + + R+ +
Sbjct: 100 SPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS--RKDTSR 157
Query: 136 EAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEE 195
+ ++E+ + RR R S S ++ + SS+ ++ RG + + +
Sbjct: 158 NCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 217
Query: 196 PRRERRQ 202
+++R++
Sbjct: 218 KKKKRKK 224
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 53.5 bits (127), Expect = 2e-07
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 23 ARGPA--IASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPAR----ARPPRENR 76
ARGPA +ASAG G R GTW G R ALP+R A P E
Sbjct: 53 ARGPAPLLASAG--------GGRARDGTW-----GVRTKGSGAALPSRPASRAAPRPEAS 99
Query: 77 KRAVPARAARGPPKRPAGGQTGGVEAASG-EERSQPRRPRRPPPAPRRPRPAPGRRKSLY 135
+P ARG P GG+ G A G +RS+ R R + +R + + R+ +
Sbjct: 100 SPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS--RKDTSR 157
Query: 136 EAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEE 195
+ ++E+ + RR R S S ++ + SS+ ++ RG + + +
Sbjct: 158 NCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 217
Query: 196 PRRERRQ 202
+++R++
Sbjct: 218 KKKKRKK 224
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 53.1 bits (126), Expect = 2e-07
Identities = 66/229 (28%), Positives = 88/229 (38%), Gaps = 35/229 (15%)
Query: 21 PRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAV 80
P A GPA G P P G A +RG + L G R P LP + P ++
Sbjct: 937 PGADGPA----GAPGTPGPQGIAGQRG--VVGLPGQRGERGFPGLPGPSGEP--GKQGPS 988
Query: 81 PARAARGPP--KRPAG-----GQTG-----GVEAASGEERSQPRRPRRPPPAPRRPRPAP 128
A RGPP P G G++G G E + G + S + R P P AP
Sbjct: 989 GASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048
Query: 129 GRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRG- 187
G + P G+SG RG+ G +G + G VG G + P RG
Sbjct: 1049 GAPGAPGPVGP------AGKSGDRGETGPAGPA-GPVGPVGARGPAG------PQGPRGD 1095
Query: 188 -GFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
G +G + + + + PP P SP A+ AGP PP
Sbjct: 1096 KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP 1144
Score = 44.7 bits (104), Expect = 7e-05
Identities = 67/235 (28%), Positives = 81/235 (34%), Gaps = 33/235 (14%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRG-------TWLRVLRGPRAPSPAPALPAR 68
G P +P ARGP+ G PP P G + G T + GP P PA
Sbjct: 407 GAPGFPGARGPS-GPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG-PAG 464
Query: 69 ARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAP 128
R R P GPP G + G A G + R P P P+ +P
Sbjct: 465 EEGKRGARGEPGPT-GLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSP 523
Query: 129 GRRKSLYEA----APLLTREKG--GRSGRRGDRGGSGWSHGHTARVGGTG-DSSAGLTTF 181
G EA A LT G G G+ G G +G G G G AG+ F
Sbjct: 524 GEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAG-QDGRPGPPGPPGARGQAGVMGF 582
Query: 182 PGSSRGGFSGREEEPRR--ERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAP 234
PG G EP + ER P + PA +D A GP P
Sbjct: 583 PGP-----KGAAGEPGKAGERGVPGPPGAVGPA--------GKDGEAGAQGPPGP 624
Score = 42.0 bits (97), Expect = 5e-04
Identities = 59/226 (26%), Positives = 76/226 (33%), Gaps = 30/226 (13%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPS---PVGRARRRGTWLRVLRG---PRAPSPAPALP 66
G+ G P P RGP P + P + R + L +G P P P P
Sbjct: 233 GEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSP 292
Query: 67 ARARPPRENRKRAVPARAARGPPKRPAGGQ-TGGVEAASGEERSQPRRPRRPPPAPRRPR 125
P + R +P R PAG + G A+G P P P
Sbjct: 293 GENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG---------PTGPAGPP 343
Query: 126 PAPGRRKSLYEAAPLLTREKGGRSGRRGDRG--GSGWSHGHTARVGGTGDSSA-GLTTFP 182
PG + EA P R G G RG+ G G + G G G A G P
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 403
Query: 183 G-SSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAP 227
G + GF G R PS + P P+ + +P AP
Sbjct: 404 GIAGAPGFPG--------ARGPSGPQG--PGGPPGPKGNSGEPGAP 439
Score = 42.0 bits (97), Expect = 5e-04
Identities = 67/260 (25%), Positives = 79/260 (30%), Gaps = 41/260 (15%)
Query: 13 GQWGTPLYPRARGPA--IASAGYSRPPSPVGRARRRGTW-------LRVLRGPR------ 57
G+ G P P A GPA AG PP P G A RG + L GP
Sbjct: 596 GERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEA 655
Query: 58 -------------APSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAAS 104
AP P+ A R P + RG P G A
Sbjct: 656 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAP 715
Query: 105 GEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGH 164
G SQ + P R PG + +A P G+ G RG G G G
Sbjct: 716 GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIG-PPGP 774
Query: 165 TARVGGTGDSSAGLTTFPGSSRGGFSGREEE----------PRRERRQPSLQRSTPPAPT 214
G G+S P +RG R E P QP + P
Sbjct: 775 AGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPG-AKGEPGDAG 833
Query: 215 YSPRSDPRDPAAPRAGPEAP 234
+ P PA P AGP P
Sbjct: 834 AKGDAGPPGPAGP-AGPPGP 852
Score = 41.6 bits (96), Expect = 6e-04
Identities = 54/203 (26%), Positives = 70/203 (34%), Gaps = 22/203 (10%)
Query: 54 RGPRAPSPAPAL------PARARPPRENRKRAVPARAARGPPKRPAG---GQTGGVEAAS 104
RGPR P+ P P PP P P+ G TGG+
Sbjct: 120 RGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPG 179
Query: 105 GEERSQPRRPRRPP--PAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSH 162
S PR PP P P+ + PG + P+ R G G+ GD G +G
Sbjct: 180 PMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAG-KP 238
Query: 163 GHTARVGGTGDSSA----GLTTFPG-SSRGGFSGREEEPRRERRQPSLQRSTPPAPTYS- 216
G G G A G PG GFSG + + P+ + P +P +
Sbjct: 239 GRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGL--DGAKGDAGPAGPKGEPGSPGENG 296
Query: 217 --PRSDPRDPAAPRAGPEAPPPA 237
+ PR R P AP PA
Sbjct: 297 APGQMGPRGLPGERGRPGAPGPA 319
Score = 35.4 bits (80), Expect = 0.043
Identities = 62/215 (28%), Positives = 74/215 (34%), Gaps = 37/215 (17%)
Query: 32 GYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAA--RGPP 89
G + P P G A G +G PS PA P AR +R P A GPP
Sbjct: 764 GLTGPIGPPGPAGAPGD-----KGESGPS-GPAGPTGARGAPGDRGEPGPPGPAGFAGPP 817
Query: 90 KRPAGGQTG-----GVEAASGEERSQPRRPRRP--PPAPRRPRPAPGRRKSLYEAAPLLT 142
A GQ G G A G+ + P P P PP P APG + + A P
Sbjct: 818 G--ADGQPGAKGEPGDAGAKGD--AGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGA 873
Query: 143 REKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPG-SSRGGFSGREEEPRRERR 201
G +GR G G SG +AG PG + + G G E R
Sbjct: 874 TGFPGAAGRVGPPGPSG---------------NAGPPGPPGPAGKEGGKGPRGETGPAGR 918
Query: 202 QPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
+ PP P S D P P P P
Sbjct: 919 PGEVGPPGPPGPAGEKGSPGAD--GPAGAPGTPGP 951
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 52.0 bits (123), Expect = 4e-07
Identities = 70/236 (29%), Positives = 86/236 (36%), Gaps = 32/236 (13%)
Query: 13 GQWGTPLYPRARG-PAIA----SAGYSRPPSPVGRARRRGTWLRVLRGPR-APSPAPALP 66
G+ G+P P A G P A + G+ P P G +G G R AP PA
Sbjct: 465 GKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGP-----AGERGAPGPAGPRG 519
Query: 67 ARARPPRENRKRAVPARAA-RGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPR 125
A P R+ VP RG P P G G + G SQ R PP P PR
Sbjct: 520 AAGEPGRDG----VPGGPGMRGMPGSPGGP---GSDGKPGPPGSQGESGRPGPPGPSGPR 572
Query: 126 PAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSS 185
PG + P G++G RG GG G G + G TG T PG
Sbjct: 573 GQPG---VMGFPGPKGNDGAPGKNGERGGPGGPG-PQGPPGKNGETGPQGPPGPTGPGGD 628
Query: 186 RG-----GFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
+G G G + P P + P P P+ D P AP +A P
Sbjct: 629 KGDTGPPGPQGLQGLP--GTGGPPGENGKPGEP--GPKGDAGAPGAPGGKGDAGAP 680
Score = 45.8 bits (107), Expect = 3e-05
Identities = 56/187 (29%), Positives = 72/187 (38%), Gaps = 33/187 (17%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARAR-- 70
G+ G+P P A G+ PP PVG A + G R GP P+ AP PA +R
Sbjct: 1035 GENGSPGAPGA-------PGHPGPPGPVGPAGKSGD--RGESGPAGPAGAPG-PAGSRGA 1084
Query: 71 ----PPRENR-----KRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAP 121
PR ++ + A + RG P P + G G S R P P
Sbjct: 1085 PGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGP 1144
Query: 122 RRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTF 181
P PG+ + P+ G G RG+RG G S GH + G G A
Sbjct: 1145 SGP---PGKDGTSGHPGPI---GPPGPRGNRGERGSEG-SPGHPGQPGPPGPPGA----- 1192
Query: 182 PGSSRGG 188
PG GG
Sbjct: 1193 PGPCCGG 1199
Score = 43.9 bits (102), Expect = 1e-04
Identities = 63/231 (27%), Positives = 74/231 (32%), Gaps = 61/231 (26%)
Query: 13 GQWGTPLYPRARGPA--IASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARAR 70
G+ G P P +GP G PP P G +G GP P LP
Sbjct: 594 GERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGD-----TGPPGPQGLQGLPGTGG 648
Query: 71 PPRENRKRAVPA-RAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPG 129
PP EN K P + G P P G G A GE R PP
Sbjct: 649 PPGENGKPGEPGPKGDAGAPGAPGGKGDAG---APGE---------RGPP---------- 686
Query: 130 RRKSLYEAAPLLTREKGGRSGRRGDRGGSG--WSHGHTARVGGTGDSSA----GLTTFPG 183
G +G G RGG+G G G G A GL PG
Sbjct: 687 -----------------GLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPG 729
Query: 184 SSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAP 234
RGG P+ ++ +P P A + PR P P GP P
Sbjct: 730 -ERGGLG--SPGPKGDKGEP----GGPGADGVPGKDGPRGPTGP-IGPPGP 772
Score = 43.1 bits (100), Expect = 2e-04
Identities = 66/246 (26%), Positives = 85/246 (34%), Gaps = 33/246 (13%)
Query: 13 GQWGTPLYPRARGP-----AIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA 67
G+ G P P A G A S G PP P G A G+ +G P+ +P +
Sbjct: 306 GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGS--PGAKGEVGPAGSPG--S 361
Query: 68 RARPPRENRKRAVPARAARGPPKRPA-GGQTGGVE--AASGEERSQPRRPRRPPPAPRRP 124
P + A+GPP P G GG +G + R PP P
Sbjct: 362 NGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGA 421
Query: 125 RPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG--GSGWSHGHTARVGGTGDSSAGLTTFP 182
APG R E + + G G RG+ G G + G + G G+ A
Sbjct: 422 NGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGA 481
Query: 183 GSSRG--GFSG--------REEEPRRERRQPSLQRSTPPAPTYSPRSDPRD--PAAP--R 228
RG GF G E+ P ER P P P + RD P P R
Sbjct: 482 AGERGAPGFRGPAGPNGIPGEKGPAGERGAPG-----PAGPRGAAGEPGRDGVPGGPGMR 536
Query: 229 AGPEAP 234
P +P
Sbjct: 537 GMPGSP 542
Score = 36.6 bits (83), Expect = 0.019
Identities = 62/241 (25%), Positives = 77/241 (31%), Gaps = 36/241 (14%)
Query: 7 SCVPLGGQWGTPLYPR---ARGPAIAS-AGYSRPPSPVGRARRRGTWLRVLRGPRAPSPA 62
SC P G Q +P Y G A+ AGY P P G GT +
Sbjct: 143 SC-PTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGT--------SGHPGS 193
Query: 63 PALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRR----PP 118
P P PP E P +A P P G A E +P RP P
Sbjct: 194 PGSPGYQGPPGE------PGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGP 247
Query: 119 PAPRRPRPAPGRRKSLYEAAPLLTREKG--GRSGRRGDRGGSGWSHGHTARVGGTG-DSS 175
P + P PG P + +G GR+G +G+ G G G G G
Sbjct: 248 PGIKGPAGIPG--------FPGMKGHRGFDGRNGEKGETGAPGLK-GENGLPGENGAPGP 298
Query: 176 AGLTTFPGS-SRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAP 234
G PG R G G + + S + PP P + A GP
Sbjct: 299 MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGS 358
Query: 235 P 235
P
Sbjct: 359 P 359
Score = 35.8 bits (81), Expect = 0.033
Identities = 51/186 (27%), Positives = 64/186 (34%), Gaps = 32/186 (17%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPP 72
G+ G P P +GPA P G RG R G + + AP L P
Sbjct: 240 GERGLPGPPGIKGPAGI-------PGFPGMKGHRGFDGR--NGEKGETGAPGLKGENGLP 290
Query: 73 RENRK------RAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
EN R P RG P P G + A G + QP PP P
Sbjct: 291 GENGAPGPMGPRGAPGE--RGRPGLPGAAGARGNDGARGSD-GQPG-----PPGPPGTAG 342
Query: 127 APGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWS--------HGHTARVGGTGD-SSAG 177
PG + E P + G G+RG+ G G + G GG G+ AG
Sbjct: 343 FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAG 402
Query: 178 LTTFPG 183
+ PG
Sbjct: 403 IPGAPG 408
Score = 33.9 bits (76), Expect = 0.13
Identities = 66/262 (25%), Positives = 81/262 (30%), Gaps = 53/262 (20%)
Query: 13 GQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTW----LRVLRGPRA---------- 58
G G P RGP G PP P G+ +G L + GPR
Sbjct: 750 GADGVPGKDGPRGPT----GPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGP 805
Query: 59 --PSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTG-------GVEAASGEERS 109
P+ P P + P +R P G P AG G G + G ER
Sbjct: 806 PGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKG-ERG 864
Query: 110 QPRRPRR-----------PP-----PAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRG 153
P P PP P P P +PG+ A G SG +G
Sbjct: 865 SPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKG 924
Query: 154 DRG--GSGWSHGHTARVGGTGD-SSAGLTTFPG-SSRGGFSGREEEPRRERRQPSLQRST 209
D G G S G G G AG+T G + G G P P +
Sbjct: 925 DAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSP-----GPQGVKGE 979
Query: 210 PPAPTYSPRSDPRDPAAPRAGP 231
P + S R P P+ P
Sbjct: 980 SGKPGANGLSGERGPPGPQGLP 1001
Score = 31.6 bits (70), Expect = 0.63
Identities = 53/206 (25%), Positives = 65/206 (31%), Gaps = 27/206 (13%)
Query: 54 RGPRAPSPAPALPARARPP-------------RENRKRAVPARAARGPPKRP-AGGQTG- 98
RGP P P L A P R+ R G P P A G G
Sbjct: 992 RGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGP 1051
Query: 99 ----GVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGD 154
G SG+ P P R APG + + T E+G +G +G
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGE--TGERGA-AGIKGH 1108
Query: 155 RGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAP- 213
RG G + G G G A + P RG G P ++ PP P
Sbjct: 1109 RGFPG-NPGAPGSPGPAGQQGAIGSPGPAGPRGPV-GPSGPPGKDGTSGHPGPIGPPGPR 1166
Query: 214 -TYSPRSDPRDPAAP-RAGPEAPPPA 237
R P P + GP PP A
Sbjct: 1167 GNRGERGSEGSPGHPGQPGPPGPPGA 1192
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 52.0 bits (123), Expect = 4e-07
Identities = 69/219 (31%), Positives = 85/219 (38%), Gaps = 50/219 (22%)
Query: 36 PPSPVGR--ARRRGTWLRVLRGPRAPSPAPA----------LPARARPPRENRKRAVPAR 83
P +P G+ RRG GPR P+P PA P RARP R+ AR
Sbjct: 37 PRTPGGQLPGARRGP------GPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAAR 90
Query: 84 AARGPPKRPA--GGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLY---EAA 138
P RP + GG A G P PA PRPAPGR +L AA
Sbjct: 91 CLPLRPHRPTRRHRRPGGFPLAWGS----------PQPA---PRPAPGRSSALALAGGAA 137
Query: 139 PLLTR-EKGGRSGRRGDRGGSGWSHGHTARVGGT-GDSSAGLTTFPGSSRGGFSGREEEP 196
P + R ++ G SG R GG G + R GGT G G P ++ GG R
Sbjct: 138 PGVARAQRPGGSGGRSHPGGPG-----SPRGGGTVGPGDRG----PAAADGGRPQRTVRA 188
Query: 197 RRERRQPSLQRSTPPAPTYSPRSDP---RDPAAPRAGPE 232
R + T P S P + P +PR G +
Sbjct: 189 AETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQ 227
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 52.0 bits (123), Expect = 4e-07
Identities = 56/233 (24%), Positives = 85/233 (36%), Gaps = 27/233 (11%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN 75
G P P +G + RP P G+ + G + P P P P P N
Sbjct: 76 GKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQ------SQGPPPRPGKPEGPPPQGGN 129
Query: 76 RKRAVPARAAR--GPPKRPAGGQTGGVEAASGEERSQP----RRPRRPPPAPRRPRPAPG 129
+ + P R + GPP + G Q+ G G+ P + + PPP P +P P
Sbjct: 130 QSQGPPPRPGKPEGPPPQ-GGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPP 188
Query: 130 RRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGT-------GDSSAGLTTFP 182
+ + + P + G + G++ S G R G G+ G P
Sbjct: 189 QGGNQSQGPPPRPGKPEGPPPQGGNQ-----SQGPPPRPGKPEGPPSQGGNKPQGPPPHP 243
Query: 183 GSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
G +G +E + +R P + PP P +P+ PA GP PP
Sbjct: 244 GKPQG--PPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPP 294
Score = 48.1 bits (113), Expect = 6e-06
Identities = 56/247 (22%), Positives = 81/247 (32%), Gaps = 42/247 (17%)
Query: 21 PRARGPAIASAGYSRPP---SPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRK 77
P R P + PP P GR + G + P P P P P N+
Sbjct: 36 PEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQ------SQGPPPRPGKPEGPPPQGGNQS 89
Query: 78 RAVPARAARGPPKRPAGG-QTGGVEAASGEERSQP----RRPRRPPPAPRRPRPAPGRRK 132
+ P R + + P GG Q+ G G+ P + + PPP P +P P +
Sbjct: 90 QGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 149
Query: 133 SLYEAAPLLTREKGGRSGRRGDRG----------------GSGWSHGHTARVGGT----- 171
+ + P + G + G++ G S G R G
Sbjct: 150 NQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPP 209
Query: 172 --GDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRA 229
G+ S G PG G S +P+ P + PP P+ P P
Sbjct: 210 QGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPP-----PPG 264
Query: 230 GPEAPPP 236
P+ PPP
Sbjct: 265 RPQGPPP 271
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN 75
G P P +G + RP P G + G P+ P P P P + PP+E
Sbjct: 202 GKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGN------KPQGPPPHPGKP-QGPPPQEG 254
Query: 76 RK--RAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
K R P +GPP P G + +G +P+ PPP P+ RP
Sbjct: 255 NKPQRPPPPGRPQGPPP-PGGNPQQPLPPPAG-------KPQGPPPPPQGGRP 299
Score = 31.6 bits (70), Expect = 0.63
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 16 GTPLYP-RARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRE 74
G P +P + +GP + P P GR P+ P P P + PP
Sbjct: 238 GPPPHPGKPQGPPPQEGNKPQRPPPPGR-------------PQGPPPPGGNPQQPLPPPA 284
Query: 75 NRKRAVPARAARGPPKRPAGGQ 96
+ + P G P RP GQ
Sbjct: 285 GKPQGPPPPPQGGRPHRPPQGQ 306
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 51.6 bits (122), Expect = 6e-07
Identities = 44/139 (31%), Positives = 55/139 (39%), Gaps = 18/139 (12%)
Query: 27 AIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAAR 86
A A+A +P GR RR P P+P L R+R P RAVP
Sbjct: 103 AAAAAHDQEAAAPTGRRWRR-----------RPGPSPPLQPRSRHPHTRYPRAVPEATPL 151
Query: 87 GPP--KRPAGGQTGGVEAASGEERSQPRRPRRPP---PAPRRPRPA--PGRRKSLYEAAP 139
PP RP G ++ RS+ PP P PR PRP P R +L E
Sbjct: 152 RPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDPRPRAPRPGDHPRRSPALRETPS 211
Query: 140 LLTREKGGRSGRRGDRGGS 158
L G R+G+R G+
Sbjct: 212 LSPPSPGRRNGKRAAGKGT 230
Score = 43.9 bits (102), Expect = 1e-04
Identities = 69/248 (27%), Positives = 89/248 (35%), Gaps = 61/248 (24%)
Query: 14 QWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPR 73
QWG+ +P R + A+A S P P P +R
Sbjct: 28 QWGSRAHPNPRSASSAAAAASSS---------------------FPPPGFIHPPSSRAAV 66
Query: 74 ENRKRAVPARAARGPPKRPAG--GQTGGV---------------EAASGEERSQPRRPRR 116
+R RA PA A R P+ AG +TG + EAA+ R RRP
Sbjct: 67 HSRLRAAPAAAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGP 126
Query: 117 PPP-APRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSS 175
PP PR P +++ EA PL R G R R G S AR G++
Sbjct: 127 SPPLQPRSRHPHTRYPRAVPEATPL--RPPPGTRPRAKSRPGCR-SSPFPARSRTPGEA- 182
Query: 176 AGLTTFPGSSRGGFSGREEEP-RRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAG---- 230
G RG R P RR P+L+ + P+ SP S R AG
Sbjct: 183 -------GPPRGDPRPRAPRPGDHPRRSPALRET----PSLSPPSPGRRNGKRAAGKGTT 231
Query: 231 --PEAPPP 236
P+ PPP
Sbjct: 232 PQPQPPPP 239
Score = 30.8 bits (68), Expect = 1.1
Identities = 44/171 (25%), Positives = 51/171 (29%), Gaps = 33/171 (19%)
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGG---VEAASGEERSQPRRPRRPPPAPRRPRPAPG 129
+ + A P A P + Q G S + PPP P +
Sbjct: 5 KATEEAAAPPGVAESPARPRVNEQWGSRAHPNPRSASSAAAAASSSFPPPGFIHPPSSRA 64
Query: 130 RRKSLYEAAP-----LLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGS 184
S AAP LL R G R G GS A D A T
Sbjct: 65 AVHSRLRAAPAAAPRLLPRVLAGAPARTGALAGSRLR----AAAAAAHDQEAAAPT---- 116
Query: 185 SRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
RR RR+P P+P PRS PRA PEA P
Sbjct: 117 -----------GRRWRRRPG------PSPPLQPRSRHPHTRYPRAVPEATP 150
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 51.6 bits (122), Expect = 6e-07
Identities = 51/166 (30%), Positives = 67/166 (40%), Gaps = 13/166 (7%)
Query: 21 PRA---RGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA----RARPPR 73
PRA RG ++G P +R + + R PS P P RPPR
Sbjct: 397 PRAAGRRGRMAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPRPPR 456
Query: 74 ENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKS 133
R A P AA+ T ++AA G R +PR P P P P P+ +R+
Sbjct: 457 PRRGPA-PTLAAQAAGSCRRWRSTAEIDAADGR-RVRPRAPAARVPGPG-PSPSAPQRRL 513
Query: 134 LYEAAPLLTREKGGRSG---RRGDRGGSGWSHGHTARVGGTGDSSA 176
LY A + GR G RRG GG G +G + G+S A
Sbjct: 514 LYGCAGSDSECSAGRLGPLGRRGPAGGVGGGYGESESSASEGESPA 559
Score = 45.1 bits (105), Expect = 5e-05
Identities = 68/245 (27%), Positives = 86/245 (35%), Gaps = 68/245 (27%)
Query: 23 ARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPA--PALPARARPPRENR---- 76
AR P++ G P SP +R W AP PA PA P+ P E R
Sbjct: 302 AREPSLERVG-GHPTSPAALSR---AWASSWESEAAPEPAAPPAAPSPPDSPAEGRLVKA 357
Query: 77 ---------KRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPA 127
R +P RAAR P G++ E+S PR RPR A
Sbjct: 358 QYIPGAQAATRGLPGRAARRKPPPLTRGRS--------VEQSPPR---------ERPR-A 399
Query: 128 PGRRKSLYEAAPLLTREKGGRSGRRGDRGG--SGWSHGHTARVGGTGDSSAGLTTFPGSS 185
GRR + EA SGRRG + S T+ +G +G +P +
Sbjct: 400 AGRRGRMAEA-----------SGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTAE 448
Query: 186 RGGFSGREEEPRRERRQPSLQRSTPPAPTY-------------SPRSDPRDPAAPRAGPE 232
R E P R RR P+ + A + R PR PAA GP
Sbjct: 449 R-----EEPRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRAPAARVPGPG 503
Query: 233 APPPA 237
P A
Sbjct: 504 PSPSA 508
Score = 44.7 bits (104), Expect = 7e-05
Identities = 64/209 (30%), Positives = 74/209 (35%), Gaps = 25/209 (11%)
Query: 42 RARRRGTWLRVLRGPR-APSPAPALPARARPPRENRKRAVP----ARAARGPPKRPAGGQ 96
R RRRG PR +P A P R R+ A P AR AR P GG
Sbjct: 259 RRRRRGAGQ-----PRTSPGGADGGPRRQNSVRQRPPDASPSPGSARPAREPSLERVGGH 313
Query: 97 TGGVEA-----ASGEERSQPRRPRRPPPAPRRP-RPAPGR--RKSLYEAAPLLTREKGGR 148
A AS E P PP AP P PA GR + A TR GR
Sbjct: 314 PTSPAALSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGR 373
Query: 149 SGRRG----DRGGSGWSH--GHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQ 202
+ RR RG S R G A + GS R + R + +
Sbjct: 374 AARRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRSQSETSLLGR 433
Query: 203 PSLQRSTPPAPTYSPRSDPRDPAAPRAGP 231
S S PP + R +PR P PR GP
Sbjct: 434 ASAVPSGPPKYPTAEREEPR-PPRPRRGP 461
Score = 32.7 bits (73), Expect = 0.28
Identities = 62/242 (25%), Positives = 75/242 (30%), Gaps = 70/242 (28%)
Query: 21 PRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGP-RAPSPAPALPARA-----RPPRE 74
PR+ +AG S P A RR GP PSP A+ R+ RPP +
Sbjct: 184 PRSFSAPYPTAGGSAGPEACSSAERRAR-----AGPFLTPSPLHAVAMRSPRPCGRPPTD 238
Query: 75 NRKRAVPARAARG-------PPKRPAGGQT----GGVEAASGEERSQPRRPRRPPPAPRR 123
+ R G +R GQ GG + + S +RP P+P
Sbjct: 239 SPDAGGAGRPLDGYISALLRRRRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDASPSPGS 298
Query: 124 PRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPG 183
RPA R SL RVGG S A L
Sbjct: 299 ARPA--REPSL-------------------------------ERVGGHPTSPAAL----- 320
Query: 184 SSRGGFSGREEEPRRERRQPSLQRSTPPAPT--------YSPRSDPRDPAAP-RAGPEAP 234
SR S E E E P S P +P Y P + P RA P
Sbjct: 321 -SRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKP 379
Query: 235 PP 236
PP
Sbjct: 380 PP 381
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 51.6 bits (122), Expect = 6e-07
Identities = 56/206 (27%), Positives = 76/206 (36%), Gaps = 48/206 (23%)
Query: 56 PRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR 115
P+ P P P P P N+ + P PP +P G G + G P +P
Sbjct: 47 PQRPPPPPGKPQGPPPQGGNQSQGPPP-----PPGKPEGRPPQGGNQSQGPP-PHPGKPE 100
Query: 116 RPPP--------------APRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWS 161
RPPP P RP P G + P G+ R +GG+ S
Sbjct: 101 RPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPP-------GKPERPPPQGGN-QS 152
Query: 162 HG---HTARVGG----TGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPT 214
G H + G G+ S + PG +G P++E +P Q PP
Sbjct: 153 QGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQG-------PPQQEGNKP--QGPPPPGKP 203
Query: 215 YSP---RSDPRDPAAPRAG-PEAPPP 236
P +P+ P AP AG P+ PPP
Sbjct: 204 QGPPPAGGNPQQPQAPPAGKPQGPPP 229
Score = 44.3 bits (103), Expect = 9e-05
Identities = 47/149 (31%), Positives = 61/149 (40%), Gaps = 35/149 (23%)
Query: 10 PLGGQW--GTPLYPRA--RGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPAL 65
P GG GTP P R P RPP P G+ R + + P P P
Sbjct: 104 PQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPP--QGGNQSQGPPPHPGK 161
Query: 66 PARARPPRENRKRAVPARAARGPPKRPAG---------------GQTGGVEAASGEERSQ 110
P PP+E K +R+AR PP +P G G+ G A G + Q
Sbjct: 162 P-EGPPPQEGNK----SRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQ-Q 215
Query: 111 PR-----RPRRPPPAP---RRPRPAPGRR 131
P+ +P+ PPP P R PRPA G++
Sbjct: 216 PQAPPAGKPQGPPPPPQGGRPPRPAQGQQ 244
Score = 36.6 bits (83), Expect = 0.019
Identities = 39/149 (26%), Positives = 53/149 (35%), Gaps = 23/149 (15%)
Query: 97 TGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG 156
+G E + +QP+RP PP P+ P P G + + P + GR + G++
Sbjct: 33 SGKPEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQS---QGPPPPPGKPEGRPPQGGNQS 89
Query: 157 GSGWSH-GHTARVGGT-GDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPT 214
H G R G+ S G PG +P R Q Q PP P
Sbjct: 90 QGPPPHPGKPERPPPQGGNQSQGTPPPPG-----------KPERPPPQGGNQSHRPPPPP 138
Query: 215 YSPRSDP-------RDPAAPRAGPEAPPP 236
P P + P PE PPP
Sbjct: 139 GKPERPPPQGGNQSQGPPPHPGKPEGPPP 167
>gi|156415990 Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 51.2 bits (121), Expect = 8e-07
Identities = 54/193 (27%), Positives = 71/193 (36%), Gaps = 32/193 (16%)
Query: 59 PSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQP--RRPRR 116
P P +R P R +R +P + PP A + G S ER++ +RPRR
Sbjct: 163 PGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRR 222
Query: 117 --PPP------------APRRPRPAPGR-RKSLYEAAPLLTREKGG-------RSGRRGD 154
PPP P + +P G R E APL ++ G R R
Sbjct: 223 WCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYR 282
Query: 155 RGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPT 214
R GG G++ S+G G EP+R R +P QR AP
Sbjct: 283 RPFRPRPRQQPTTEGGDGETKP--------SQGPADGSRPEPQRPRNRPYFQRRRQQAPG 334
Query: 215 YSPRSDPRDPAAP 227
PR PAAP
Sbjct: 335 PQQAPGPRQPAAP 347
Score = 28.5 bits (62), Expect = 5.3
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 58 APSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP--R 115
A + A A+PA P AV G P++ GG GG AASG P P R
Sbjct: 6 AAAGATAVPAATVPATAAGVVAVVVPVPAGEPQK-GGGAGGGGGAASGPAAGTPSAPGSR 64
Query: 116 RP--PPAPRRPRPAPGRR 131
P P PAP R
Sbjct: 65 TPGNPATAVSGTPAPPAR 82
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 51.2 bits (121), Expect = 8e-07
Identities = 59/224 (26%), Positives = 83/224 (37%), Gaps = 40/224 (17%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN 75
G P P +G + + S P P G + G P+ P P P P P N
Sbjct: 219 GKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQ------PQGPPPPPGKPQGPPPQGGN 272
Query: 76 RKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA----PRRPRPAPGRR 131
+ + P PP +P G G + S RS P +P+ PPP P+ P P PG+
Sbjct: 273 KPQGPP------PPGKPQGPPPQG-GSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK- 324
Query: 132 KSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSG 191
P +GG + G G + GG+ SA + PG +G
Sbjct: 325 -------PQGPPPQGGNKPQGPPPPGK--PQGPPPQ-GGSKSRSA--RSPPGKPQG---- 368
Query: 192 REEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
P++E P + PP +P+ PA GP PP
Sbjct: 369 ---PPQQEGNNP---QGPPPPAGGNPQQPQAPPAGQPQGPPRPP 406
Score = 45.1 bits (105), Expect = 5e-05
Identities = 53/235 (22%), Positives = 80/235 (34%), Gaps = 50/235 (21%)
Query: 36 PPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGG 95
PPSP G+ P+ P P + PP + + P + P P G
Sbjct: 50 PPSPPGK-------------PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 96
Query: 96 QTGGVEA---ASGEERSQPRRPRRPPP----APRRPRPAPGRRK-------SLYEAAPLL 141
+ G S RS P +P+ PPP P+ P P PG+ + + + P
Sbjct: 97 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 156
Query: 142 TREKG----GRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRG---------- 187
+ +G G + R R G G + G+ G PG +G
Sbjct: 157 GKPQGPPPQGDNKSRSSRSPPGKPQGPPPQ---GGNQPQGPPPPPGKPQGPPPQGGNKPQ 213
Query: 188 --GFSGREEEPRRERRQPSLQRSTPPAPTYSP----RSDPRDPAAPRAGPEAPPP 236
G+ + P + S +PP P + P+ P P P+ PPP
Sbjct: 214 GPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 268
Score = 43.9 bits (102), Expect = 1e-04
Identities = 52/214 (24%), Positives = 76/214 (35%), Gaps = 29/214 (13%)
Query: 32 GYSRPPSPVGRARRRGTWLRVLRG-PRAPSPAPALPARARPPRENRKRAVPARAARGPPK 90
G + P P G + R + R G P+ P P + PP + + P + P
Sbjct: 157 GKPQGPPPQGDNKSRSS--RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 214
Query: 91 RPAGGQTGGV----EAASGEERSQPRRPRRPPP----APRRPRPAPGRRKSLYEAAPLLT 142
P G+ G + S RS P +P+ PPP P+ P P PG+ P
Sbjct: 215 PPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGK--------PQGP 266
Query: 143 REKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQ 202
+GG + G G + G SS + PG +G +P+
Sbjct: 267 PPQGGNKPQGPPPPGK--PQGPPPQGGSKSRSS---RSPPGKPQGPPPQGGNQPQGPPPP 321
Query: 203 PSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
P + PP P+ P P P+ PPP
Sbjct: 322 PGKPQGPPPQGGNKPQGPP-----PPGKPQGPPP 350
Score = 38.5 bits (88), Expect = 0.005
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 26/138 (18%)
Query: 16 GTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPREN 75
G P P +G + + + S P P G + G P+ P P P P P N
Sbjct: 281 GKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQ------PQGPPPPPGKPQGPPPQGGN 334
Query: 76 RKRAVP---------------ARAARGPPKRPAGG---QTGGVEAASGEERSQPRRPRRP 117
+ + P +R+AR PP +P G + + P++P+ P
Sbjct: 335 KPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAP 394
Query: 118 PPAPRR--PRPAPGRRKS 133
P + PRP G R S
Sbjct: 395 PAGQPQGPPRPPQGGRPS 412
Score = 35.4 bits (80), Expect = 0.043
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 8/139 (5%)
Query: 98 GGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGG 157
G + A + ++P+ P PP P+ P P G + + P + G + G++
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQP---QGPPPPPGKPQGPPPQGGNKPQ 90
Query: 158 SGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSP 217
G GD S + PG +G +P+ P + PP P
Sbjct: 91 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 150
Query: 218 RSDPRDPAAPRAGPEAPPP 236
+ P P P+ PPP
Sbjct: 151 QGPP-----PPGKPQGPPP 164
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 50.8 bits (120), Expect = 1e-06
Identities = 63/232 (27%), Positives = 91/232 (39%), Gaps = 39/232 (16%)
Query: 10 PLGGQ--WGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPA 67
P GG G P + +GP P SP G+ + G + P+ P P P P
Sbjct: 123 PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ--GPPPQGGNQPQGPPPPPGKP- 179
Query: 68 RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPA----PRR 123
+ PP+ +K P PP +P G G ++ S + S P +P+ PPP P+
Sbjct: 180 QGPPPQGGKKPQGPP-----PPGKPQGPPPQGDKSRSSQ--SPPGKPQGPPPQGGNQPQG 232
Query: 124 PRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPG 183
P P PG+ P +GG + G G A+ GG+ SA + PG
Sbjct: 233 PPPPPGK--------PQGPPPQGGNKPQGPPPPGK--PQGPPAQ-GGSKSQSA--RSPPG 279
Query: 184 SSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
+G P++E P + PP +P+ PA GP PP
Sbjct: 280 KPQG-------PPQQEGNNP---QGPPPPAGGNPQQPQAPPAGQPQGPPRPP 321
Score = 48.9 bits (115), Expect = 4e-06
Identities = 43/181 (23%), Positives = 63/181 (34%), Gaps = 12/181 (6%)
Query: 56 PRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR 115
P+ PSP + PP + + P + P P G+ G + RS PR
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRS----PR 91
Query: 116 RPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSS 175
PP P+ P P G + + P + G + G+R G GD S
Sbjct: 92 SPPGKPQGPPPQGGNQP---QGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKS 148
Query: 176 AGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPP 235
+ PG +G +P+ P + PP P+ P P P+ PP
Sbjct: 149 RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPP-----PPGKPQGPP 203
Query: 236 P 236
P
Sbjct: 204 P 204
Score = 46.6 bits (109), Expect = 2e-05
Identities = 64/244 (26%), Positives = 92/244 (37%), Gaps = 45/244 (18%)
Query: 10 PLGGQW--GTPLYP-RARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALP 66
P GG G P P + +GP + P P G+ + R PR+P P P
Sbjct: 102 PQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGP 161
Query: 67 A-------RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPR---RPRR 116
+ PP + + P + + P P G+ G + RS +P+
Sbjct: 162 PPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQG 221
Query: 117 PPP----APRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTG 172
PPP P+ P P PG+ P +GG + G G A+ GG+
Sbjct: 222 PPPQGGNQPQGPPPPPGK--------PQGPPPQGGNKPQGPPPPGK--PQGPPAQ-GGSK 270
Query: 173 DSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAG-P 231
SA + PG +G P++E P Q PPA +P+ P AP AG P
Sbjct: 271 SQSA--RSPPGKPQG-------PPQQEGNNP--QGPPPPA-----GGNPQQPQAPPAGQP 314
Query: 232 EAPP 235
+ PP
Sbjct: 315 QGPP 318
Score = 35.0 bits (79), Expect = 0.057
Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 10 PLGGQW--GTPLYP-RARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALP 66
P GG G P P + +GP + P P G+ + GP A + +
Sbjct: 224 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ----------GPPAQGGSKSQS 273
Query: 67 ARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRP 126
AR+ P + +GPP PAGG +A QP+ P RPP R RP
Sbjct: 274 ARSPPGKPQGPPQQEGNNPQGPPP-PAGGNPQQPQAPPA---GQPQGPPRPPQGGRPSRP 329
Score = 33.9 bits (76), Expect = 0.13
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 36 PPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGG 95
PP P G+ + G + P+ P P P P PP + ++ AR+ G P+ P
Sbjct: 233 PPPPPGKPQ--GPPPQGGNKPQGPPP-PGKPQG--PPAQGGSKSQSARSPPGKPQGPPQQ 287
Query: 96 QTGGVEAASGEERSQPRRPRRPPPAPRR--PRPAPGRRKS 133
+ + P++P+ PP + PRP G R S
Sbjct: 288 EGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPS 327
Score = 30.0 bits (66), Expect = 1.8
Identities = 38/147 (25%), Positives = 55/147 (37%), Gaps = 14/147 (9%)
Query: 98 GGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKS--LYEAAPLLTREKGGRSGRRGDR 155
G + S + ++P+ P PP P+ P P G + P +G +S R R
Sbjct: 34 GNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKS--RSPR 91
Query: 156 GGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPA--P 213
G G + G+ G PG +G P+ P + PP
Sbjct: 92 SPPGKPQGPPPQ---GGNQPQGPPPPPGKPQGPPPQGGNRPQGP-PPPGKPQGPPPQGDK 147
Query: 214 TYSPRSDPRDPAA--PRAG--PEAPPP 236
+ SPRS P P P+ G P+ PPP
Sbjct: 148 SRSPRSPPGKPQGPPPQGGNQPQGPPP 174
Score = 29.6 bits (65), Expect = 2.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 199 ERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
+ PSL P P+ + P+ P P P+ PPP
Sbjct: 25 QEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPP 62
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 50.4 bits (119), Expect = 1e-06
Identities = 39/107 (36%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTR 143
AA GPPKRP G G S+P PRRPPPAP G RK L PL
Sbjct: 1679 AAEGPPKRPGGSSPLNAVPCEGPPGSEP--PRRPPPAPH-----DGDRKELPREQPLPPG 1731
Query: 144 EKGGRSGRRGDRGGSGWSHGHTARVG-----GTGDSSAGLTTFPGSS 185
G +R DRG + R G GT D + L G S
Sbjct: 1732 PIGTERSQRTDRGTEPGPIRPSHRPGPPVQFGTSDKDSDLRLVVGDS 1778
Score = 40.4 bits (93), Expect = 0.001
Identities = 55/232 (23%), Positives = 76/232 (32%), Gaps = 28/232 (12%)
Query: 13 GQWGTPL-YPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARP 71
G WG P YP GP +PP+P W + + + AR R
Sbjct: 421 GNWGPPGDYPDRGGPPC------KPPAPEDEDE---AWRQRRKQSSSEISLAVERARRRR 471
Query: 72 PRENRKRAVPARAARGPPKRPAGGQTGGVEAA-SGEERSQPRRPRRPPPAPRRPR--PAP 128
E R+ RAA + + G + E + P P P P P P+ PAP
Sbjct: 472 EEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAP 531
Query: 129 GRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGG 188
P E+ ++ G + T GG SS +S G
Sbjct: 532 PAPPPASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSS--------TSSGS 583
Query: 189 FSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRA---GPEAPPPA 237
F EP+ PS + PP P + P P+ GP PP+
Sbjct: 584 FEASPVEPQL----PSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPS 631
Score = 35.0 bits (79), Expect = 0.057
Identities = 62/237 (26%), Positives = 78/237 (32%), Gaps = 60/237 (25%)
Query: 54 RGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAG-----------GQTGGVEA 102
+GP P R P + +R +P PP+R AG +
Sbjct: 911 QGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRR-AGPIKKPPPPTKVEELPPKPL 969
Query: 103 ASGEERSQPRRP--------------RRPPPAPRRPRPAPGRRKSLYEAAPLLTREKG-- 146
G+E +P +P PP P P R S P R +G
Sbjct: 970 EQGDETPKPPKPDPLKITKGKLGGPKETPPNGNLSPAPRLRRDYSYERVGPTSCRGRGRG 1029
Query: 147 -----GRSGRRGDRGGSGWS------------HGHTARVGGTG-----DSSAGLTTFPGS 184
GR G RG GG G G R GGTG + G T
Sbjct: 1030 EYFARGR-GFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETR 1088
Query: 185 SRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAG-----PEAPPP 236
S G S EE P+R R++ S S +P SD P P+ G P APPP
Sbjct: 1089 SEG--SEYEEIPKRRRQRGSETGSETHESDLAP-SDKEAP-TPKEGTLTQVPLAPPP 1141
Score = 33.9 bits (76), Expect = 0.13
Identities = 49/178 (27%), Positives = 64/178 (35%), Gaps = 40/178 (22%)
Query: 56 PRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR 115
P AP PAP PP +P A PP R P
Sbjct: 1997 PPAPPPAP-------PPLS----LLPVGPALQPPSLAV--------------RPPPAPAT 2031
Query: 116 RPPPAPRRPRPAPGRRKSLY--EAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGD 173
R P+P RP PA R L+ E P +K + GG G ++R TG
Sbjct: 2032 RVLPSPARPFPASLGRAELHPVELKPFQDYQK-----LSSNLGGPG-----SSRTPPTGR 2081
Query: 174 SSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGP 231
S +GL + ++ +SG R + Q Q S P A + P+ R PR GP
Sbjct: 2082 SFSGLNSRLKATPSTYSGVFRTQRVDLYQ---QASPPDALRWIPKPWERTGPPPREGP 2136
Score = 33.5 bits (75), Expect = 0.16
Identities = 56/219 (25%), Positives = 76/219 (34%), Gaps = 56/219 (25%)
Query: 51 RVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQ 110
R+ P AP AP+ PA PP AVP P PA T ++
Sbjct: 503 RLKAEPAAPPAAPSTPAP--PP------AVPKELPAPPAPPPASAPT---------PETE 545
Query: 111 PRRPRRPPPAPRRPRPAPGRRKSL--------------YEAAPLLTREKGGRSGRRGDRG 156
P P + PPA P P +L +EA+P+ + + G
Sbjct: 546 PEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPV-EPQLPSKEGPEPPEE 604
Query: 157 GSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEE--PRRERRQPSL--------- 205
+ +V GD G T P S G+ ++ PR +R+Q
Sbjct: 605 VPPPTTPPVPKVEPKGDG-IGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQHQ 663
Query: 206 -----QRSTPPAPTYSPRSDPRD---PAAPRAGPEAPPP 236
Q S PP P P S P+ A P P+APPP
Sbjct: 664 WQQHQQGSAPPTPV--PPSPPQPVTLGAVP--APQAPPP 698
Score = 32.3 bits (72), Expect = 0.37
Identities = 47/215 (21%), Positives = 67/215 (31%), Gaps = 23/215 (10%)
Query: 29 ASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGP 88
+++G RPP G+ P+P A +RPP P P
Sbjct: 363 SASGEERPPEADGKKGNSPN-------SEPPTPKTAWAETSRPPETEPGPPAPKPPLPPP 415
Query: 89 PKRPAG--GQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKG 146
+ PAG G G G P PPAP A +R+ + L E+
Sbjct: 416 HRGPAGNWGPPGDYPDRGG--------PPCKPPAPEDEDEAWRQRRKQSSSEISLAVERA 467
Query: 147 GRSGRRGDRGGSGWSHGHTARVGGTGDSSAG-----LTTFPGSSRGGFSGREEEPRRERR 201
R +R A D G L P + S P +
Sbjct: 468 RRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKE 527
Query: 202 QPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
P+ + PPA +P ++P +PA P P
Sbjct: 528 LPA-PPAPPPASAPTPETEPEEPAQAPPAQSTPTP 561
Score = 32.0 bits (71), Expect = 0.48
Identities = 55/199 (27%), Positives = 68/199 (34%), Gaps = 57/199 (28%)
Query: 55 GPRAPSPAPALPARARPPRENRKRA-----VPARAARGPPKRPAGGQTGGV--------- 100
GP P PAP R R E R +P R +R G +TG
Sbjct: 1072 GPNHP-PAP----RGRTASETRSEGSEYEEIPKR------RRQRGSETGSETHESDLAPS 1120
Query: 101 --EAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGG- 157
EA + +E + + P PPP P PAP R + A G RRG GG
Sbjct: 1121 DKEAPTPKEGTLTQVPLAPPPPGAPPSPAPAR----FTARGGRVFTPRGVPSRRGRGGGR 1176
Query: 158 ------SGWSHGHTA------RVGGTGDSSAGL--TTFPGS----SRGGFSGRE------ 193
GWS + G S L PG +RGG +G
Sbjct: 1177 PPPQVCPGWSPPAKSLAPKKPPTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGMED 1236
Query: 194 -EEPRRERRQPSLQRSTPP 211
E PRR R + Q+ PP
Sbjct: 1237 GERPRRRRHGRAQQQDKPP 1255
Score = 30.8 bits (68), Expect = 1.1
Identities = 60/238 (25%), Positives = 78/238 (32%), Gaps = 65/238 (27%)
Query: 54 RGPRAPSPAPALPARARPPRENRKRAV-PARAARGPPKRPAGG---QTGGVEAASGEERS 109
+ P+ PSP P P R P R N + P GP R GG + GV + R
Sbjct: 1505 QAPQGPSPRP--PTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAGVSPFPPKRRE 1562
Query: 110 QPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKG-GRSGRRGDRGGSG-----WSHG 163
+P PR+P P P + + L ++ +G G D G W+
Sbjct: 1563 RP--PRKPELLQEESLPPP------HSSGFLGSKPEGPGPQAESRDTGTEALTPHIWNRL 1614
Query: 164 HTAR----------------------VGGT------------GDS--SAGLTTFPGSSRG 187
HTA V GT GDS S+G + S G
Sbjct: 1615 HTATSRKSYRPSSMEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDG 1674
Query: 188 GFSGREEEPRRERRQPSLQRSTP---PAPTYSPRSDPRDP------AAPRAGPEAPPP 236
G G E P + S + P P + PR P P PR P P P
Sbjct: 1675 GLKGAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAPHDGDRKELPREQPLPPGP 1732
Score = 28.1 bits (61), Expect = 6.9
Identities = 45/200 (22%), Positives = 68/200 (34%), Gaps = 30/200 (15%)
Query: 60 SPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPP 119
S P + + R P K ++ G P GG+TG G++RS P R P
Sbjct: 1387 SQRPGMERQNRRPGPGGKAGSSGSSSGGGGGGP-GGRTG---PGRGDKRSWPSPKNRSRP 1442
Query: 120 APRRP-----RPAPGRRKSLYEAAPLLTREKGG-------RSGRRGDRGGSGWSHGHTAR 167
RP P P +++ ++ G S R+G G GH
Sbjct: 1443 PEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPG---GHPRH 1499
Query: 168 VGGTGDSSAGLTTFPGS---SRGGFSGREEEPRRERRQPSLQ------RSTPPAPTYSPR 218
G + G + P + + SG +P E P ++ R + + P+
Sbjct: 1500 KPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAGVSPFPPK 1559
Query: 219 SDPRDPAAPRAGPE--APPP 236
R P P E PPP
Sbjct: 1560 RRERPPRKPELLQEESLPPP 1579
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 50.1 bits (118), Expect = 2e-06
Identities = 68/253 (26%), Positives = 89/253 (35%), Gaps = 51/253 (20%)
Query: 10 PLGGQ-WGTPLYPRARG---------PAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAP 59
P GG WG+P G P A + +P SP R R +A
Sbjct: 302 PSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVR-----------DKAA 350
Query: 60 SPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPP 119
+ AP PAR + R P + GG+ G R + RR R
Sbjct: 351 AAAPTPPARGKESPSPRS---------APSSQGRGGRAAGGAGRRRRRRRRRRRSRSSAS 401
Query: 120 APRR-----PRPAP--GRRKSLYEAAPLLTREKGGRSGRRG-------DRGGSGWSHGHT 165
APRR PRPAP G +SL A + + G G G +RG G HG
Sbjct: 402 APRRRGRRRPRPAPPRGSSRSLSRARS--SSDSGSGRGAPGPGPEPGSERGHGG--HGKR 457
Query: 166 ARVGGTGDSSAGLTTFPGS--SRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRSDPRD 223
A+ A + PG+ RGG G+ S S P+ + S RS +
Sbjct: 458 AKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRS-RSAEKR 516
Query: 224 PAAPRAGPEAPPP 236
P +P P P
Sbjct: 517 PHSPSRSPSPKKP 529
Score = 47.0 bits (110), Expect = 1e-05
Identities = 63/223 (28%), Positives = 82/223 (36%), Gaps = 63/223 (28%)
Query: 21 PRARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAV 80
PRAR PA S PSP RR G + R+P P P + +R P ++R R+
Sbjct: 463 PRAR-PASTS------PSPGAHGRRGGPEGK--SSSRSPGPHPRSWSSSRSPSKSRSRSA 513
Query: 81 ---PARAARGP-PKRPAGGQTGG--------VEAASGEERSQP----RRPRRPPPA---P 121
P +R P PK+P G EA RS+ R+ RR P+ P
Sbjct: 514 EKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIRKRRRDSPSFMEP 573
Query: 122 RR-----PRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSA 176
RR RP P R S ++ L+ + RS R
Sbjct: 574 RRITSARKRPIPYYRPSPSSSSSCLSSDYSTRSHSRSPS--------------------- 612
Query: 177 GLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPTYSPRS 219
PG S G +S R R R P S P+P+Y RS
Sbjct: 613 -----PGHSHGSYSSRSHGTRSRTRSP----SRTPSPSYHSRS 646
Score = 37.7 bits (86), Expect = 0.009
Identities = 53/217 (24%), Positives = 80/217 (36%), Gaps = 38/217 (17%)
Query: 34 SRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPP--KR 91
S P P + +++G R + R S + P R+ +K R R +R
Sbjct: 163 SASPPPKKKKKKKGGHRRSRKKRRLESECSC--GSSSPLRKKKKSVKKHRRDRSDSGSRR 220
Query: 92 PAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLT--------- 142
++ + E+ + +RP P R R + G S P L+
Sbjct: 221 KRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHS-----PSLSSHYSDSRSP 275
Query: 143 -------REKGGRSGRR---GDR-----GGSGWSHGHTARVGGTGDSSAGLTTFPGSSRG 187
R++G ++G + G R GGSGW G R GG+G S PGS+
Sbjct: 276 SRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGW--GSPQRNGGSGQRSGAHGGRPGSAHS 333
Query: 188 GFSGREEEPRRERRQPSLQRSTPPA---PTYSPRSDP 221
R R + + TPPA + SPRS P
Sbjct: 334 PPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAP 370
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 50.1 bits (118), Expect = 2e-06
Identities = 53/192 (27%), Positives = 64/192 (33%), Gaps = 19/192 (9%)
Query: 11 LGGQWGTPLYP-----RARGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPAL 65
L G WG+P P A GP + PP+ + A G +R GP P L
Sbjct: 383 LSGPWGSPPPPPEQIHSAPGPRRPAPALLAPPTFIFPAPTNGEPMRP--GPPGLQELPPL 440
Query: 66 PARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPR------RPPP 119
P PP P PP P G A + P P P
Sbjct: 441 PPPTPPPTLQPPALQPTPLPVAPPLTPGLGHKESALAPTAAPALPPALAADQAPAPSPAP 500
Query: 120 APRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLT 179
AP P+P AAP+ TR + + G R RG + H G G
Sbjct: 501 APTVAEPSPPVSAPAPAAAPIKTRTRRNK-GSRAARGATRKDGLH-----GDGPRERATA 554
Query: 180 TFPGSSRGGFSG 191
T P SS GG G
Sbjct: 555 TVPDSSGGGGGG 566
Score = 32.7 bits (73), Expect = 0.28
Identities = 44/143 (30%), Positives = 53/143 (37%), Gaps = 27/143 (18%)
Query: 11 LGGQWGTPLYPRARGPAIASAGYSRPPSPVGRARRRGTWLRVLR----------GPRAPS 60
LGG G L+ A G + + P P G AR G R + G P
Sbjct: 268 LGGGGGGGLFA-ASGAISYAEVLKQGPLPPGAARPLGEVSRGAQEAEGGDGDGEGCSGPP 326
Query: 61 PAPALPARARPPRE------NRKRAVPARAARGPPK----RPAGGQTGG----VEAASGE 106
APA ARA PP ++ + A GP + AGG G A SG
Sbjct: 327 SAPASQARALPPPPYTTFPGSKPKFDWVSAPDGPERHFRFNGAGGGIGAPRRRAAALSGP 386
Query: 107 ERSQPRRPRR--PPPAPRRPRPA 127
S P P + P PRRP PA
Sbjct: 387 WGSPPPPPEQIHSAPGPRRPAPA 409
Score = 29.3 bits (64), Expect = 3.1
Identities = 36/148 (24%), Positives = 46/148 (31%), Gaps = 29/148 (19%)
Query: 5 NMSCVPLGGQWGTPLYPRARGPAIASAGYSRPP---SPVGRARRRGTWLRV------LRG 55
N+ P G + P R P P + R G W L
Sbjct: 3 NLQSEPSAGGGSRKVQPSDRAPDSRRTSLVEPEMTSQAMRLTRGLGVWFPGSATPPGLMV 62
Query: 56 PRAPSPAPA-LPARARPPRENRKRAVPARAARGPPKRPAGGQTGG--------------- 99
PR P +P+ LP P A A PP PAG G
Sbjct: 63 PREPQASPSTLPLTLERPSPVMPPPEEAAAVSAPPPAPAGTLLPGPSKWQKPAGTPVPRI 122
Query: 100 ---VEAASGEERSQPR-RPRRPPPAPRR 123
+EA+ + P RP +PPP PR+
Sbjct: 123 RRLLEASHRGQGDPPSLRPLKPPPPPRQ 150
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 49.7 bits (117), Expect = 2e-06
Identities = 62/202 (30%), Positives = 80/202 (39%), Gaps = 45/202 (22%)
Query: 36 PPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGG 95
PP+P G A+ R + V P P L R PP R+R P RA R PP P
Sbjct: 49 PPAP-GAAQIRAAEVLVYGAP--PGRVSRLLERFDPPAAPRRRGSPERA-RPPPPPP--- 101
Query: 96 QTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTR----EKGGRSG- 150
P P RPPPA P APG R A+P R +K G +
Sbjct: 102 ---------------PPAPPRPPPAAPSPPAAPGPRGG--GASPGARRSDFLQKTGSNSF 144
Query: 151 ---RRGDRGGSG---WSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPS 204
RG G+G S+GH+A G ++ + PGS + +P+ E PS
Sbjct: 145 TVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSG-------QWKPKVESGDPS 197
Query: 205 LQRSTPPAPTYSPRSDPRDPAA 226
L PP +P + P P A
Sbjct: 198 LH---PPPSPGTPSATPASPPA 216
Score = 33.1 bits (74), Expect = 0.22
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 192 REEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
R + P RR+ S +R+ PP P P + PR P A + P AP P
Sbjct: 78 RFDPPAAPRRRGSPERARPPPPP-PPPAPPRPPPAAPSPPAAPGP 121
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 49.7 bits (117), Expect = 2e-06
Identities = 62/202 (30%), Positives = 80/202 (39%), Gaps = 45/202 (22%)
Query: 36 PPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGG 95
PP+P G A+ R + V P P L R PP R+R P RA R PP P
Sbjct: 49 PPAP-GAAQIRAAEVLVYGAP--PGRVSRLLERFDPPAAPRRRGSPERA-RPPPPPP--- 101
Query: 96 QTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTR----EKGGRSG- 150
P P RPPPA P APG R A+P R +K G +
Sbjct: 102 ---------------PPAPPRPPPAAPSPPAAPGPRGG--GASPGARRSDFLQKTGSNSF 144
Query: 151 ---RRGDRGGSG---WSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPS 204
RG G+G S+GH+A G ++ + PGS + +P+ E PS
Sbjct: 145 TVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSG-------QWKPKVESGDPS 197
Query: 205 LQRSTPPAPTYSPRSDPRDPAA 226
L PP +P + P P A
Sbjct: 198 LH---PPPSPGTPSATPASPPA 216
Score = 33.1 bits (74), Expect = 0.22
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 192 REEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
R + P RR+ S +R+ PP P P + PR P A + P AP P
Sbjct: 78 RFDPPAAPRRRGSPERARPPPPP-PPPAPPRPPPAAPSPPAAPGP 121
>gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 48.9 bits (115), Expect = 4e-06
Identities = 60/225 (26%), Positives = 83/225 (36%), Gaps = 48/225 (21%)
Query: 24 RGPAIASAGYSRPPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARP------------ 71
R PA+ G+ P P R RR L V G P+PA AR P
Sbjct: 31 RSPALPRPGFPAPGFPALRLPRRRAQLGVKLGG---GPSPASGARPSPHLEGAGCETRPW 87
Query: 72 --PRENRKRAVPARAARGPPKRPAGGQTGGVEA-------------ASGEERSQPRRPRR 116
PR R+ A+ + G R G +TG + +G R +P
Sbjct: 88 LGPRPRRRLALHLQVPEGA--RQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRP--AHG 143
Query: 117 PPPAPRRPRPAPGR--RKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGG---- 170
P PR P+P+ GR ++ +L R +G R R G +HG + G
Sbjct: 144 APGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATL 203
Query: 171 ---TGDSSAGLTTFPGSSRGGFSGREEEP--RRERRQPSLQRSTP 210
G ++ T +P + S R P RR R PS+ RS P
Sbjct: 204 RAPPGRGASSETMWPTEN---LSSRRRAPPQRRRTRAPSIARSLP 245
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 48.9 bits (115), Expect = 4e-06
Identities = 35/100 (35%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 36 PPSPVGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKR----AVPARAARGPPKR 91
PPSP R R R RA + A A A RE R R A + GP +
Sbjct: 180 PPSPAARQPEPPPMPRAARSARAATAARAAAAEREEAREERARGCSEASRTSSDSGPSRA 239
Query: 92 PAGGQTGGVEAASGEERSQPRRP-RRPPPAPRRPRPAPGR 130
PA GG AA+ R++PR P P P RP+ A R
Sbjct: 240 PAARVVGGEAAATAAARARPRAPLAAGSPVPVRPQDAAAR 279
Score = 35.8 bits (81), Expect = 0.033
Identities = 37/165 (22%), Positives = 52/165 (31%), Gaps = 8/165 (4%)
Query: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPP-PAPRRPRPAPGRR 131
+ +R+ A+PA+ + P R G G + E P PP PA R+P P P R
Sbjct: 136 KRDRQGALPAQRGKSPACRETGVGAEGCRVLTAEAHPVMALPAPPPSPAARQPEPPPMPR 195
Query: 132 KSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSG 191
+ A R + G S + +G S A G +
Sbjct: 196 AARSARAATAARAAAAEREEAREERARGCSEA-SRTSSDSGPSRAPAARVVGGEAAATAA 254
Query: 192 REEEPRRERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAGPEAPPP 236
PR S P P + R A + G PP
Sbjct: 255 ARARPRAPLAAGS------PVPVRPQDAAARSAAGMQPGHGRRPP 293
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,924,746
Number of Sequences: 37866
Number of extensions: 1100196
Number of successful extensions: 17162
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 1801
Number of HSP's that attempted gapping in prelim test: 8982
Number of HSP's gapped (non-prelim): 7725
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.