Guide to the Human Genome
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Name: LOC729587 Sequence: fasta or formatted (169aa) NCBI GI: 169162889
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         16           2
 C cysteine            2.4          4           1
 D aspartate           1.8          3           1
 E glutamate           6.5         11           2
 F phenylalanine       2.4          4           1
 G glycine             8.3         14           2
 H histidine           3.0          5           1
 I isoleucine          3.6          6           1
 K lysine              1.8          3           1
 L leucine             8.3         14           2
 M methionine          0.6          1           1
 N asparagine          3.0          5           1
 P proline             7.7         13           2
 Q glutamine           5.9         10           1
 R arginine            8.3         14           2
 S serine             11.8         20           2
 T threonine           7.7         13           2
 V valine              4.7          8           1
 W tryptophan          3.0          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729574             1.000   PREDICTED: hypothetical protein 
LOC644634             0.873   PREDICTED: similar to UPF0627 protein ENSP000003581...
LOC100133301          0.851   PREDICTED: hypothetical protein 
LOC100292572          0.025   PREDICTED: hypothetical protein 
NID2                  0.022   nidogen 2 precursor 
PRAGMIN               0.022   pragmin 
KLF4                  0.019   Kruppel-like factor 4 (gut) 
LOC649201             0.015   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC729660             0.015   PREDICTED: similar to Putative uncharacterized prot...
LOC731275             0.015   PREDICTED: similar to Putative uncharacterized prot...
DZIP1L                0.015   DAZ interacting protein 1-like 
C19orf29              0.015   chromosome 19 open reading frame 29 
C19orf29              0.015   chromosome 19 open reading frame 29 
PCDH8                 0.012   protocadherin 8 isoform 2 precursor 
PCDH8                 0.012   protocadherin 8 isoform 1 precursor 
TRIM41                0.012   tripartite motif-containing 41 isoform 2 
TRIM41                0.012   tripartite motif-containing 41 isoform 1 
HHLA1                 0.009   HERV-H LTR-associating 1 
LOC100293939          0.009   PREDICTED: hypothetical protein 
LOC100291281          0.009   PREDICTED: hypothetical protein XP_002348078 
LOC100288642          0.009   PREDICTED: hypothetical protein XP_002343774 
ZNF469                0.009   zinc finger protein 469 
EGR4                  0.009   early growth response 4 
VPS11                 0.009   vacuolar protein sorting 11 
LOC730183             0.009   PREDICTED: hypothetical protein 
LOC100288181          0.009   PREDICTED: hypothetical protein 
LOC100288181          0.009   PREDICTED: hypothetical protein XP_002342920 
ABCG4                 0.009   ATP-binding cassette, subfamily G, member 4 
ABCG4                 0.009   ATP-binding cassette, subfamily G, member 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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