HHLA1 14530

Name: HHLA1	Sequence: fasta or formatted (531aa)		NCBI GI: 223029414
Description: HERV-H LTR-associating 1		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.7 46 3 C cysteine 2.8 15 1 D aspartate 2.1 11 1 E glutamate 5.6 30 3 F phenylalanine 4.0 21 2 G glycine 5.1 27 2 H histidine 1.3 7 1 I isoleucine 3.4 18 2 K lysine 5.3 28 2 L leucine 9.8 52 2 M methionine 2.3 12 1 N asparagine 3.4 18 2 P proline 7.0 37 2 Q glutamine 3.4 18 2 R arginine 5.1 27 2 S serine 11.1 59 2 T threonine 11.1 59 2 V valine 4.1 22 1 W tryptophan 2.3 12 1 Y tyrosine 2.3 12 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 HERV-H LTR-associating 1 MUC5AC 0.030 mucin 5AC MUC5B 0.030 mucin 5, subtype B, tracheobronchial MUC2 0.024 mucin 2 precursor MUC12 0.021 PREDICTED: mucin 12 MUC12 0.021 PREDICTED: mucin 12, cell surface associated LOC100128719 0.021 PREDICTED: hypothetical protein, partial LOC100128719 0.021 PREDICTED: hypothetical protein, partial MUC17 0.020 mucin 17 MUC6 0.019 mucin 6, gastric LOC100134147 0.019 PREDICTED: hypothetical protein MICALL2 0.019 MICAL-like 2 isoform 1 COL27A1 0.018 collagen, type XXVII, alpha 1 LOC100132635 0.017 PREDICTED: similar to mucin 5, partial SPEG 0.016 SPEG complex locus LOC100294238 0.016 PREDICTED: hypothetical protein LOC100294204 0.016 PREDICTED: hypothetical protein LOC729792 0.016 PREDICTED: hypothetical protein LOC730401 0.016 PREDICTED: hypothetical protein MUC16 0.015 mucin 16 LOC100133756 0.015 PREDICTED: hypothetical protein, partial LOC729792 0.015 PREDICTED: hypothetical protein MUC3A 0.015 PREDICTED: mucin 3A, intestinal LOC100294501 0.015 PREDICTED: hypothetical protein LOC100294249 0.015 PREDICTED: hypothetical protein XP_002344067 LOC729792 0.014 PREDICTED: hypothetical protein LOC100294136 0.014 PREDICTED: hypothetical protein LOC100294091 0.014 PREDICTED: hypothetical protein MUC3A 0.014 PREDICTED: mucin 3A, cell surface associated, parti... LOC100294236 0.014 PREDICTED: similar to diffuse panbronchiolitis crit... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.