Guide to the Human Genome
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Name: LOC100288642 Sequence: fasta or formatted (145aa) NCBI GI: 239746544
Description:

PREDICTED: hypothetical protein XP_002343774

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         18           3
 C cysteine            0.7          1           1
 D aspartate           2.8          4           1
 E glutamate           6.9         10           2
 F phenylalanine       0.7          1           1
 G glycine            11.0         16           2
 H histidine           3.4          5           1
 I isoleucine          2.1          3           1
 K lysine              0.7          1           1
 L leucine            15.2         22           2
 M methionine          0.7          1           1
 N asparagine          2.1          3           1
 P proline             9.0         13           1
 Q glutamine           5.5          8           2
 R arginine            9.0         13           2
 S serine              6.2          9           3
 T threonine           2.1          3           1
 V valine              9.0         13           2
 W tryptophan          0.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343774 
LOC100293939          1.000   PREDICTED: hypothetical protein 
LOC100291281          1.000   PREDICTED: hypothetical protein XP_002348078 
AUH                   0.027   AU RNA binding protein/enoyl-Coenzyme A hydratase pre...
LOC100129169          0.019   PREDICTED: hypothetical protein 
LOC100129169          0.019   PREDICTED: hypothetical protein 
LOC100129169          0.019   PREDICTED: hypothetical protein 
TNKS1BP1              0.019   tankyrase 1-binding protein 1 
LOC100293087          0.015   PREDICTED: hypothetical protein 
LOC100127930          0.015   PREDICTED: hypothetical protein 
LOC729587             0.011   PREDICTED: hypothetical protein 
LOC729574             0.011   PREDICTED: hypothetical protein 
KCNH2                 0.011   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.011   voltage-gated potassium channel, subfamily H, member ...
ANKRD36               0.011   PREDICTED: ankyrin repeat domain 36 
LOC644634             0.011   PREDICTED: similar to UPF0627 protein ENSP000003581...
MMP11                 0.011   matrix metalloproteinase 11 preproprotein 
SLC38A10              0.011   solute carrier family 38, member 10 isoform a 
RASAL1                0.011   RAS protein activator like 1 
CP                    0.008   ceruloplasmin precursor 
LOC100290189          0.008   PREDICTED: hypothetical protein XP_002347700 
LOC100289086          0.008   PREDICTED: hypothetical protein XP_002344149 
DVL3                  0.008   dishevelled 3 
LACTB                 0.008   lactamase, beta isoform a 
LACTB                 0.008   lactamase, beta isoform b 
SPOCD1                0.008   SPOC domain containing 1 
LOC100127930          0.008   PREDICTED: hypothetical protein 
LOC100291385          0.008   PREDICTED: hypothetical protein XP_002347391 
LOC100127930          0.008   PREDICTED: hypothetical protein 
LOC100287401          0.008   PREDICTED: hypothetical protein XP_002342373 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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