Guide to the Human Genome
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Name: LOC644634 Sequence: fasta or formatted (169aa) NCBI GI: 113411437
Description:

PREDICTED: similar to UPF0627 protein ENSP00000358171 isoform 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         14           1
 C cysteine            3.0          5           1
 D aspartate           2.4          4           1
 E glutamate           7.1         12           2
 F phenylalanine       2.4          4           2
 G glycine             8.3         14           2
 H histidine           3.6          6           1
 I isoleucine          3.6          6           1
 K lysine              3.0          5           1
 L leucine             8.3         14           2
 M methionine          1.2          2           1
 N asparagine          3.6          6           1
 P proline             7.7         13           2
 Q glutamine           5.3          9           1
 R arginine            6.5         11           2
 S serine             11.2         19           2
 T threonine           7.7         13           2
 V valine              4.1          7           1
 W tryptophan          3.0          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to UPF0627 protein ENSP000003581... 
LOC729587             0.860   PREDICTED: hypothetical protein 
LOC729574             0.860   PREDICTED: hypothetical protein 
LOC100133301          0.811   PREDICTED: hypothetical protein 
OSBPL10               0.024   oxysterol-binding protein-like protein 10 
NID2                  0.021   nidogen 2 precursor 
ZBTB20                0.018   zinc finger and BTB domain containing 20 
ZFYVE26               0.015   zinc finger, FYVE domain containing 26 
LOC729660             0.015   PREDICTED: similar to Putative uncharacterized prot...
LOC731275             0.015   PREDICTED: similar to Putative uncharacterized prot...
ZC3HAV1               0.012   zinc finger antiviral protein isoform 1 
ZC3HAV1               0.012   zinc finger antiviral protein isoform 2 
GCM1                  0.012   glial cells missing homolog a 
GCM2                  0.012   glial cells missing homolog 2 
APLF                  0.012   aprataxin and PNKP like factor 
PALM2-AKAP2           0.009   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.009   PALM2-AKAP2 protein isoform 1 
LOC100293939          0.009   PREDICTED: hypothetical protein 
LOC100133167          0.009   PREDICTED: hypothetical protein 
LOC100291281          0.009   PREDICTED: hypothetical protein XP_002348078 
LOC100289922          0.009   PREDICTED: hypothetical protein XP_002347871 
LOC100288642          0.009   PREDICTED: hypothetical protein XP_002343774 
ODZ4                  0.009   odz, odd Oz/ten-m homolog 4 
CANX                  0.006   calnexin precursor 
CANX                  0.006   calnexin precursor 
EXTL3                 0.006   exostoses-like 3 
TRAK1                 0.006   OGT(O-Glc-NAc transferase)-interacting protein 106 ...
TRAK1                 0.006   OGT(O-Glc-NAc transferase)-interacting protein 106 K...
ARHGAP21              0.006   Rho GTPase activating protein 21 
FAM120C               0.006   hypothetical protein LOC54954 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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