Guide to the Human Genome
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Name: LOC100133301 Sequence: fasta or formatted (169aa) NCBI GI: 169162878
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         14           2
 C cysteine            3.0          5           1
 D aspartate           2.4          4           1
 E glutamate           7.1         12           2
 F phenylalanine       3.0          5           1
 G glycine             8.9         15           2
 H histidine           3.0          5           1
 I isoleucine          4.1          7           1
 K lysine              2.4          4           1
 L leucine             7.7         13           2
 M methionine          0.6          1           1
 N asparagine          3.0          5           1
 P proline             8.3         14           2
 Q glutamine           4.1          7           1
 R arginine            7.7         13           2
 S serine             11.2         19           2
 T threonine           7.7         13           2
 V valine              4.7          8           1
 W tryptophan          2.4          4           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729587             0.841   PREDICTED: hypothetical protein 
LOC729574             0.841   PREDICTED: hypothetical protein 
LOC644634             0.813   PREDICTED: similar to UPF0627 protein ENSP000003581...
LOC100292572          0.031   PREDICTED: hypothetical protein 
INSM2                 0.021   insulinoma-associated protein IA-6 
ERRFI1                0.018   mitogen-inducible gene 6 protein 
C2orf71               0.015   hypothetical protein LOC388939 
CHD1L                 0.015   chromodomain helicase DNA binding protein 1-like [H...
ZC3HAV1               0.015   zinc finger antiviral protein isoform 1 
ZC3HAV1               0.015   zinc finger antiviral protein isoform 2 
LOC730109             0.015   PREDICTED: similar to hCG1811563 
LOC730109             0.015   PREDICTED: similar to hCG1811563 
LOC100288181          0.012   PREDICTED: hypothetical protein 
LOC100288181          0.012   PREDICTED: hypothetical protein XP_002342920 
NKD2                  0.012   naked cuticle homolog 2 
SEC31B                0.012   SEC31 homolog B 
PALM2-AKAP2           0.012   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.012   PALM2-AKAP2 protein isoform 1 
RSBN1                 0.012   round spermatid basic protein 1 
EGR4                  0.009   early growth response 4 
EEF2K                 0.009   elongation factor-2 kinase 
DZIP1L                0.009   DAZ interacting protein 1-like 
SYNJ1                 0.009   synaptojanin 1 isoform c 
SYNJ1                 0.009   synaptojanin 1 isoform a 
SYNJ1                 0.009   synaptojanin 1 isoform b 
NLRP1                 0.009   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.009   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.009   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.009   NLR family, pyrin domain containing 1 isoform 3 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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