Search of human proteins with 169160897

Search of human proteins with 169160897

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169160897 PREDICTED: similar to hCG1728885 [Homo sapiens]
         (139 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169160897 PREDICTED: similar to hCG1728885 [Homo sapiens]          290   3e-79
gi|169162148 PREDICTED: similar to hCG1728885 [Homo sapiens]          290   3e-79
gi|169161132 PREDICTED: hypothetical protein LOC100131261 [Homo ...   284   1e-77
gi|8923295 proline-rich nuclear receptor coactivator 2 [Homo sap...   284   2e-77
gi|5802982 proline-rich nuclear receptor coactivator 1 [Homo sap...    87   3e-18
gi|10937869 survival of motor neuron 2, centromeric isoform d [H...    34   0.034
gi|13259527 survival of motor neuron 2, centromeric isoform a [H...    34   0.034
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo...    34   0.034
gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]        33   0.075
gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]        33   0.075
gi|150378503 leiomodin 2 (cardiac) [Homo sapiens]                      33   0.098
gi|11225260 DNA topoisomerase I [Homo sapiens]                         32   0.13 
gi|217416343 fibrosin-like 1 [Homo sapiens]                            32   0.13 
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ...    31   0.28 
gi|158508476 mbt domain containing 1 [Homo sapiens]                    31   0.37 
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...    30   0.48 
gi|157278100 phosphonoformate immuno-associated protein 5 isofor...    30   0.48 
gi|24308111 FGFR1 oncogene partner 2 [Homo sapiens]                    30   0.48 
gi|66730423 hypothetical protein LOC389384 [Homo sapiens]              30   0.63 
gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens]    29   1.1  
gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens]    29   1.1  
gi|13491166 pumilio 1 isoform 2 [Homo sapiens]                         29   1.4  
gi|66932909 pumilio 1 isoform 1 [Homo sapiens]                         29   1.4  
gi|189011568 adenomatous polyposis coli [Homo sapiens]                 29   1.4  
gi|189011566 adenomatous polyposis coli [Homo sapiens]                 29   1.4  
gi|53759122 adenomatous polyposis coli [Homo sapiens]                  29   1.4  
gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo sa...    29   1.4  
gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo sa...    29   1.4  
gi|104526627 triadin [Homo sapiens]                                    29   1.4  
gi|151301228 formin binding protein 3 [Homo sapiens]                   29   1.4  

>gi|169160897 PREDICTED: similar to hCG1728885 [Homo sapiens]
          Length = 139

 Score =  290 bits (741), Expect = 3e-79
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMK 60
           MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMK
Sbjct: 1   MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMK 60

Query: 61  NGGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
           NGGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN
Sbjct: 61  NGGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120

Query: 121 PSDKEIMTFQLKTLLKVQV 139
           PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139


>gi|169162148 PREDICTED: similar to hCG1728885 [Homo sapiens]
          Length = 139

 Score =  290 bits (741), Expect = 3e-79
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMK 60
           MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMK
Sbjct: 1   MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMK 60

Query: 61  NGGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
           NGGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN
Sbjct: 61  NGGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120

Query: 121 PSDKEIMTFQLKTLLKVQV 139
           PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139


>gi|169161132 PREDICTED: hypothetical protein LOC100131261 [Homo
           sapiens]
          Length = 139

 Score =  284 bits (727), Expect = 1e-77
 Identities = 137/139 (98%), Positives = 137/139 (98%)

Query: 1   MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMK 60
           MGG ERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMK
Sbjct: 1   MGGRERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMK 60

Query: 61  NGGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
           NGGKNKNFPNNQSWNSSLSGPSLLFKSQA QNYAGAKFSEPPSPSVLPKPPSHWVPVSFN
Sbjct: 61  NGGKNKNFPNNQSWNSSLSGPSLLFKSQAKQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120

Query: 121 PSDKEIMTFQLKTLLKVQV 139
           PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139


>gi|8923295 proline-rich nuclear receptor coactivator 2 [Homo
           sapiens]
          Length = 139

 Score =  284 bits (726), Expect = 2e-77
 Identities = 136/139 (97%), Positives = 137/139 (98%)

Query: 1   MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMK 60
           MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSA AWQAM+
Sbjct: 1   MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 60

Query: 61  NGGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
           NGGKNKNFPNNQSWNSSLSGP LLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN
Sbjct: 61  NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120

Query: 121 PSDKEIMTFQLKTLLKVQV 139
           PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139


>gi|5802982 proline-rich nuclear receptor coactivator 1 [Homo
           sapiens]
          Length = 327

 Score = 87.4 bits (215), Expect = 3e-18
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 5/121 (4%)

Query: 21  QQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMKNGGKNKNFPNNQSW-NSSLS 79
           Q ++NRQK+K      KI   K+   + +  S  + +  K   + K F N ++  NS L 
Sbjct: 208 QPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSSDRIQKQ--EKKPFKNTENIKNSHLK 265

Query: 80  GPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWV--PVSFNPSDKEIMTFQLKTLLKV 137
             + L +    +NYAGAKFS+PPSPSVLPKPPSHW+   V  +  ++E+M   LKTLLKV
Sbjct: 266 KSAFLTEVSQKENYAGAKFSDPPSPSVLPKPPSHWMGSTVENSNQNRELMAVHLKTLLKV 325

Query: 138 Q 138
           Q
Sbjct: 326 Q 326


>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
           sapiens]
          Length = 294

 Score = 34.3 bits (77), Expect = 0.034
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 62  GGKNKNF-PNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSH----WVP 116
           G K+ N  P +  WNS L  P  +   +      G KF+ PP P   P PP H    W+P
Sbjct: 177 GNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPP--PPPPPHLLSCWLP 234


>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
           sapiens]
          Length = 282

 Score = 34.3 bits (77), Expect = 0.034
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 62  GGKNKNF-PNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSH----WVP 116
           G K+ N  P +  WNS L  P  +   +      G KF+ PP P   P PP H    W+P
Sbjct: 177 GNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPP--PPPPPHLLSCWLP 234


>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
           sapiens]
          Length = 294

 Score = 34.3 bits (77), Expect = 0.034
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 62  GGKNKNF-PNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSH----WVP 116
           G K+ N  P +  WNS L  P  +   +      G KF+ PP P   P PP H    W+P
Sbjct: 177 GNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPP--PPPPPHLLSCWLP 234


>gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]
          Length = 930

 Score = 33.1 bits (74), Expect = 0.075
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 57  QAMKNGGKNKNFPNNQSWNSSLSGPSL----LFKSQANQNYAGAKFSEPPSPSVLPKPPS 112
           Q +++GG      N+      L GP      LFK++  + + G+    PP+P + P PP 
Sbjct: 396 QQLEHGGLQPGLVNHMVVQHGLPGPDSQSAGLFKTERLEEFPGSTVDLPPAPPLPPLPPP 455

Query: 113 HWVPVSFN 120
              P  ++
Sbjct: 456 PGPPPPYH 463


>gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]
          Length = 775

 Score = 33.1 bits (74), Expect = 0.075
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 57  QAMKNGGKNKNFPNNQSWNSSLSGPSL----LFKSQANQNYAGAKFSEPPSPSVLPKPPS 112
           Q +++GG      N+      L GP      LFK++  + + G+    PP+P + P PP 
Sbjct: 241 QQLEHGGLQPGLVNHMVVQHGLPGPDSQSAGLFKTERLEEFPGSTVDLPPAPPLPPLPPP 300

Query: 113 HWVPVSFN 120
              P  ++
Sbjct: 301 PGPPPPYH 308


>gi|150378503 leiomodin 2 (cardiac) [Homo sapiens]
          Length = 547

 Score = 32.7 bits (73), Expect = 0.098
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 4   GERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGH--GYNSSAGAWQAMKN 61
           G  + +P P+    S   + +++Q+ K    Q      K++ G+  G N     WQ    
Sbjct: 332 GYHFELPGPRMSMTSILTRNMDKQRQKRLQEQ------KQQEGYDGGPNLRTKVWQRGTP 385

Query: 62  GGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPP 111
                  P +  W+S    P L  K Q  ++   +  + PP P   P PP
Sbjct: 386 SSSPYVSPRHSPWSS----PKLPKKVQTVRSRPLSPVATPPPPPPPPPPP 431


>gi|11225260 DNA topoisomerase I [Homo sapiens]
          Length = 765

 Score = 32.3 bits (72), Expect = 0.13
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 19  KNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMKNGGKNKNFPNNQSWNSSL 78
           +++++ +R+K+K  NS+ K   KK +         G+ +  K+  K+++    +      
Sbjct: 37  EHKKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKRKEEKVRA 96

Query: 79  SGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVP 116
           SG + + K + N       FS PP     P+   ++VP
Sbjct: 97  SGDAKIKKEKEN------GFSSPPQIKDEPEDDGYFVP 128


>gi|217416343 fibrosin-like 1 [Homo sapiens]
          Length = 1045

 Score = 32.3 bits (72), Expect = 0.13
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 78  LSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFNPSDKEIMTFQLKTLLKV 137
           LS   L  +SQA      A F+ PP+    P  P+  + +  +P+D E++  +L T   V
Sbjct: 360 LSTSHLALRSQAQHQLHAAMFAAPPTLPPPPALPASSLVLPGHPADHELLRQELNTRFLV 419

Query: 138 Q 138
           Q
Sbjct: 420 Q 420


>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
           containing B [Homo sapiens]
          Length = 546

 Score = 31.2 bits (69), Expect = 0.28
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 13  QSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMKNGGKNKNFPNNQ 72
           +SR+ S+N  + +R ++KE++S+ K   K+K      + S G   +++   K ++ P+ +
Sbjct: 436 RSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKE 495


>gi|158508476 mbt domain containing 1 [Homo sapiens]
          Length = 628

 Score = 30.8 bits (68), Expect = 0.37
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 7   YNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKK------KER---GHGYNSSAGAWQ 57
           Y +  P S++  +NQ   ++QK K ++ Q K  HKK      KE    G  YN   GA  
Sbjct: 555 YQLQPPASQSSRENQSASSKQKKKAKSQQYK-GHKKMTTLQLKEELLDGEDYNFLQGASD 613

Query: 58  AMKNGGKN 65
              NG  N
Sbjct: 614 QESNGSAN 621


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
           sapiens]
          Length = 2881

 Score = 30.4 bits (67), Expect = 0.48
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 1   MGGGERYNIP-APQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAM 59
           + G  R N+   PQ  N S +QQ ++ Q+  + ++     HK      G  +        
Sbjct: 202 VSGPHRVNVNHPPQMTNASNSQQSISMQQFSQTSNPSAHFHKCSSHQEGNFNGPSPNMTS 261

Query: 60  KNGGKNKNFPNNQSWNSSLSGPSLLFKSQA 89
            +   ++ F ++ S++S+   P+ L +S A
Sbjct: 262 CSVSNSQQFSSHYSFSSNHISPNSLLQSSA 291


>gi|157278100 phosphonoformate immuno-associated protein 5 isoform 1
           [Homo sapiens]
          Length = 752

 Score = 30.4 bits (67), Expect = 0.48
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 3   GGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHK 41
           G +R  +       +SK +Q+ NR++ K+QNSQ +I+ +
Sbjct: 134 GRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEE 172


>gi|24308111 FGFR1 oncogene partner 2 [Homo sapiens]
          Length = 253

 Score = 30.4 bits (67), Expect = 0.48
 Identities = 14/46 (30%), Positives = 28/46 (60%)

Query: 28  KTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMKNGGKNKNFPNNQS 73
           K KEQ+S++ +VH+ K  G   ++S    +A ++G + ++   NQ+
Sbjct: 125 KLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQN 170


>gi|66730423 hypothetical protein LOC389384 [Homo sapiens]
          Length = 652

 Score = 30.0 bits (66), Expect = 0.63
 Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 10  PAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMKNGGKNKNFP 69
           PAP  R   K+Q++    K   + +  K   ++ +RG    SS  AW   K+        
Sbjct: 278 PAPAVRK--KSQEKKTSLKRTSKTNPKKHGSEEAKRGAADVSSPEAWPPKKSSFLPLCVS 335

Query: 70  NNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFNPSDK 124
            ++   SS  G       +A    AGA     P PSVLP P     P    P D+
Sbjct: 336 GHRPSISSSYGLEEPKVQEAPSTEAGA-----PGPSVLPTPSESQEPGEELPLDR 385


>gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens]
          Length = 1173

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 8   NIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMKNGGKNKN 67
           NI  P S ++ K  + L ++    +  +   +H+  E+         A    +      +
Sbjct: 148 NIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIHENNEKNDRDRGKTNADSKKQTTVAEAD 207

Query: 68  FPNNQSWNSSLSGPSLLFKSQANQNYAGAKF 98
             NN S   SLS  S L +    ++  GAKF
Sbjct: 208 IFNNSS--RSLSSRSSLSRHHPEESPLGAKF 236



 Score = 26.6 bits (57), Expect = 7.0
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 30  KEQNSQMKIVHKKK-----ERGH--GYNSSAGAWQAMKNGGKNKNFPNNQSWNS 76
           +EQ  Q  I+  K      E GH     SS+ +W+    G K   FP  +  NS
Sbjct: 287 QEQRKQNDIIPGKNNLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNS 340


>gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens]
          Length = 1186

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 8   NIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAGAWQAMKNGGKNKN 67
           NI  P S ++ K  + L ++    +  +   +H+  E+         A    +      +
Sbjct: 148 NIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIHENNEKNDRDRGKTNADSKKQTTVAEAD 207

Query: 68  FPNNQSWNSSLSGPSLLFKSQANQNYAGAKF 98
             NN S   SLS  S L +    ++  GAKF
Sbjct: 208 IFNNSS--RSLSSRSSLSRHHPEESPLGAKF 236



 Score = 26.6 bits (57), Expect = 7.0
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 30  KEQNSQMKIVHKKK-----ERGH--GYNSSAGAWQAMKNGGKNKNFPNNQSWNS 76
           +EQ  Q  I+  K      E GH     SS+ +W+    G K   FP  +  NS
Sbjct: 287 QEQRKQNDIIPGKNNLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNS 340


>gi|13491166 pumilio 1 isoform 2 [Homo sapiens]
          Length = 1186

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 14/82 (17%)

Query: 46  GHGYNSSAGAWQAMKNGGKNKNFPNNQ----SWNSSLSGPSLLFKSQANQN-------YA 94
           G G +SS GA      GG      N+     S   SL+G S L+K  ++         Y 
Sbjct: 674 GFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYN 733

Query: 95  GAKFSEPPSPSVLPKP---PSH 113
           G  FS  P P  +P P   P H
Sbjct: 734 GLSFSSSPGPVGMPLPSQGPGH 755


>gi|66932909 pumilio 1 isoform 1 [Homo sapiens]
          Length = 1188

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 14/82 (17%)

Query: 46  GHGYNSSAGAWQAMKNGGKNKNFPNNQ----SWNSSLSGPSLLFKSQANQN-------YA 94
           G G +SS GA      GG      N+     S   SL+G S L+K  ++         Y 
Sbjct: 674 GFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRTSSSLTPIGHSFYN 733

Query: 95  GAKFSEPPSPSVLPKP---PSH 113
           G  FS  P P  +P P   P H
Sbjct: 734 GLSFSSSPGPVGMPLPSQGPGH 755


>gi|189011568 adenomatous polyposis coli [Homo sapiens]
          Length = 2843

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 66   KNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPP--SHWVPVSFNPSD 123
            +N P   S NSSLS  S + +   N+     K +EPP     P  P  S + P SF+  D
Sbjct: 1957 ENTPVCFSHNSSLSSLSDIDQENNNKENEPIKETEPPDSQGEPSKPQASGYAPKSFHVED 2016

Query: 124  KEI 126
              +
Sbjct: 2017 TPV 2019


>gi|189011566 adenomatous polyposis coli [Homo sapiens]
          Length = 2843

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 66   KNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPP--SHWVPVSFNPSD 123
            +N P   S NSSLS  S + +   N+     K +EPP     P  P  S + P SF+  D
Sbjct: 1957 ENTPVCFSHNSSLSSLSDIDQENNNKENEPIKETEPPDSQGEPSKPQASGYAPKSFHVED 2016

Query: 124  KEI 126
              +
Sbjct: 2017 TPV 2019


>gi|53759122 adenomatous polyposis coli [Homo sapiens]
          Length = 2843

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 66   KNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKFSEPPSPSVLPKPP--SHWVPVSFNPSD 123
            +N P   S NSSLS  S + +   N+     K +EPP     P  P  S + P SF+  D
Sbjct: 1957 ENTPVCFSHNSSLSSLSDIDQENNNKENEPIKETEPPDSQGEPSKPQASGYAPKSFHVED 2016

Query: 124  KEI 126
              +
Sbjct: 2017 TPV 2019


>gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo
           sapiens]
          Length = 783

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 39  VHKKKERGHGYNSSAGAWQAMKNGGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKF 98
           V+ +  R  G NSS+G  QA       KN  NNQ   S  +GPS + K  + +     K 
Sbjct: 16  VNSRPFRVTGPNSSSGI-QA------RKNLFNNQGNASPPAGPSNVPKFGSPKPPVAVKP 68

Query: 99  SEPPSPSVLPKPP 111
           S    P   PKPP
Sbjct: 69  SSEEKPDKEPKPP 81


>gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo
           sapiens]
          Length = 829

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 39  VHKKKERGHGYNSSAGAWQAMKNGGKNKNFPNNQSWNSSLSGPSLLFKSQANQNYAGAKF 98
           V+ +  R  G NSS+G  QA       KN  NNQ   S  +GPS + K  + +     K 
Sbjct: 16  VNSRPFRVTGPNSSSGI-QA------RKNLFNNQGNASPPAGPSNVPKFGSPKPPVAVKP 68

Query: 99  SEPPSPSVLPKPP 111
           S    P   PKPP
Sbjct: 69  SSEEKPDKEPKPP 81


>gi|104526627 triadin [Homo sapiens]
          Length = 729

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 5   ERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERG 46
           ++  I  P  R    ++ +  +Q+  E+  Q K+ HK+KE+G
Sbjct: 129 DKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKVTHKEKEKG 170


>gi|151301228 formin binding protein 3 [Homo sapiens]
          Length = 930

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 13  QSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKE-------RGHGYNSSAGAWQAMKNGGKN 65
           QS  VS N      ++T +Q +      KK+E       + + +N+   A QA K   K 
Sbjct: 324 QSVEVSSN----TGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKE 379

Query: 66  KNFPNNQSWNSSL 78
           K  P+N SW  ++
Sbjct: 380 KRVPSNASWEQAM 392


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.124    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,537,163
Number of Sequences: 37866
Number of extensions: 309767
Number of successful extensions: 1491
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 117
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.